G543890


Basic Information

Item Value
gene id G543890
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73634966 ~ 73636604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615872
GTTTTATGACAGCtataaataacaaaaataatttcCCCCACAATTTTGATATGGTTGAACAGTTACAACAGACATACATATCTCAATGCTACATAAGGGTAACAGCCATTCATAGAGACTTTTATGACAAGAACAGTAGAGGACACTGTGGTTCGTGAGACTGCACAGTGACAAGCCAACAAACAAACTTTTACAACATAATGAGCCATAAAATGTGGGGGGAGGTGGTAGAGGCATCACAATTCACCATCAGAACTTAAGAGATGCAGTGTCGCTCAACCCGAACGGACTGAAGGGCCACGGTTAGGAGTCGTGAGCTCTCATACAACAACACCTGGGCTGGGCTTCACCAGCATCACTTTGAGCCTGCTGTCGGACATGGAGCTCAGAGAGACCTCTGGGTCCAACCATAGCAAGCCCAGTGTATGAGGGCCCAGAGGTTGGGCAGTGAGCAGGGACAGTTTGGCACTGGTTGGGTGGACTGAGTAGACAACACAAGAGTTGAGAGAGAAAGTGGTTATGATAAGGAGCAGGGAGATGCTGAACCCAAAAGAAAAACACCAAACCCCACAGTTCAACATCTGTAGTATCAGATAAAAACTCTGGAAACAGGATGAGAATTACAGGGTCTCACTGTACAATATGTCAGCTGTGTGTAGAAAACAGATGCATTCTGTTgattaattaaaaaatataatatatttatacaCTATATTTATATGCAGATATTATTTTTTTGTGCAGAGCTAAACACTTGTTTGGTAGTAAAATGTggacatttatatatatattttttgtctttAAATATACTAGCTTGAATTACACTGCCTACTTGAGAACTTCCTTCTCCAGACAAAATGACTTGATAGGGTGATAAGTGAGTTCGGCTTGCAGGTCTGCCATCTCTTTCATTAAACTCTTTTTCTAGTGGAATGCCTAGAGTTTttacagagagaaatatagaaCTATTAGTATTAAACCGTCTTATGGTACAGAGAATAAGACACTATAAAACCAAAACAAAGGTGAAACCCTGGATTACTTAAGTCCTGGCCTGGTTGTGGGTTTGGCAAAGATATATAGTTTTTGTCAAAACATCAGTGTCTGTAGAATGACTGAAATTACATGAAGAGGTTAGCTAGACAGAGTATGTGTAAAAACAATGCCAACAGCAATGCACTCAAAAACACCTTTACCTATACTGGTACATGAATAATCATGGGATTTTACTGTACAAAATGTTGCCTTGCTGCAAACAGGTCTTTTACAGTCAACTGACAATCAAGGATCCCAATTCTACAGTGAGGTCTTTAGAAGATCAAGCCAACGGCACTGCCTGCGGGGCAGCGGAGTTTGACAGAAACACAGGACATACTTTGCTCTATCACAGAGGAGCAGTTCAATTgcttgaatgtgtttgtttttcaaGTTGTTCATACAAAGCTTAAAAACTATTTCAATCACCGAGATTTTGTTTTAAAGTCAATTACTTAAATTCTTGCAAAATAATTATTCAACTTCACGAGAATCCTGAGTAACCGTGGAAAAAATAGATATAAATCAAAAGAAAAAAACATCCCTTCATTGGAACAGCACTCCATTGGAACAGCACTCCATTGGAACAGCACTCCATTGGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615872 True 1639 lncRNA 0.39 1 73634966 73636604

Neighbor

gene id symbol gene type direction distance location
LOC110526546 LOC106587531 coding upstream 18 73616828 ~ 73634948 (+)
LOC100136290 sox6 coding upstream 242717 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 452224 73037953 ~ 73182742 (+)
LOC118965119 NA coding upstream 615266 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 615709 73019055 ~ 73019257 (+)
LOC110526547 LOC106587501 coding downstream 89523 73726127 ~ 73731840 (+)
copb1 copb coding downstream 97193 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 108295 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 157031 73793635 ~ 73891981 (+)
LOC118965098 NA coding downstream 672436 74309040 ~ 74309094 (+)
G543822 NA non-coding upstream 72373 73562367 ~ 73562593 (+)
G543820 NA non-coding upstream 86762 73547876 ~ 73548204 (+)
G543818 NA non-coding upstream 87223 73547201 ~ 73547743 (+)
G543810 NA non-coding upstream 94220 73540538 ~ 73540746 (+)
G543783 NA non-coding upstream 124026 73510642 ~ 73510940 (+)
G543978 NA non-coding downstream 88603 73725207 ~ 73725676 (+)
G543997 NA non-coding downstream 134566 73771170 ~ 73771497 (+)
G544292 NA non-coding downstream 299123 73935727 ~ 73935939 (+)
G544407 NA non-coding downstream 398876 74035480 ~ 74035734 (+)
G542890 NA other upstream 868115 72765681 ~ 72766851 (+)
saa saa other upstream 968094 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1482572 72151020 ~ 72152394 (+)
G544565 NA other downstream 651174 74287778 ~ 74288138 (+)
G545485 NA other downstream 1601196 75237800 ~ 75238164 (+)
G545601 NA other downstream 1785257 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2291624 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3250828 76827001 ~ 77038395 (+)

Expression


Co-expression Network