G543997


Basic Information

Item Value
gene id G543997
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73771170 ~ 73771497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615987
actaccccatcTCCCCTACCCCTTACTGGACCTCTCCTCCACAGTGTCCTGGTcctacccctactaccccatcTTCCCTACCCCTTACTGGACTTCTCCTCCACAGTGTCCTGATcctacccctactaccccatcTTCCCTACCCCTTACTGGACCTCTCCTCCACAGTGTCCTGGTACAACCCTACTACCCTGTCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615987 True 200 lncRNA 0.57 2 73771170 73771497

Neighbor

gene id symbol gene type direction distance location
copb1 copb coding upstream 29553 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 39330 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 136222 73616828 ~ 73634948 (+)
LOC100136290 sox6 coding upstream 378921 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 588428 73037953 ~ 73182742 (+)
tub LOC106587536 coding downstream 22138 73793635 ~ 73891981 (+)
LOC118965098 NA coding downstream 537543 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 539844 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 542139 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 544404 74315901 ~ 74315955 (+)
G543978 NA non-coding upstream 45494 73725207 ~ 73725676 (+)
G543890 NA non-coding upstream 134566 73634966 ~ 73636604 (+)
G543822 NA non-coding upstream 208577 73562367 ~ 73562593 (+)
G543820 NA non-coding upstream 222966 73547876 ~ 73548204 (+)
G543818 NA non-coding upstream 223427 73547201 ~ 73547743 (+)
G544292 NA non-coding downstream 164230 73935727 ~ 73935939 (+)
G544407 NA non-coding downstream 263983 74035480 ~ 74035734 (+)
G544423 NA non-coding downstream 289368 74060865 ~ 74061122 (+)
G544424 NA non-coding downstream 291196 74062693 ~ 74063015 (+)
G542890 NA other upstream 1004319 72765681 ~ 72766851 (+)
saa saa other upstream 1104298 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1618776 72151020 ~ 72152394 (+)
G544565 NA other downstream 516281 74287778 ~ 74288138 (+)
G545485 NA other downstream 1466303 75237800 ~ 75238164 (+)
G545601 NA other downstream 1650364 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2156731 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3115935 76827001 ~ 77038395 (+)

Expression


Co-expression Network