G544292


Basic Information

Item Value
gene id G544292
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73935727 ~ 73935939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616308
GCAGAGTGGGTCTTAGTTCTGGGTTTGTGTTGAGGTATCACGTTTGTTTATCTGACACTTGATTGTGTGAATGTTTGGGGAGCACAGGTTTTATGTcatctgtatgtacagtactgttGTCACGGTAGGAACTAGAAAGTGAGGCTATATGCTATAACGTGTTCCAGACTTGTTAAGTCTGTTAATTACAGGAGTGGTGTTCACTCTGAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616308 True 213 lncRNA 0.42 1 73935727 73935939

Neighbor

gene id symbol gene type direction distance location
tub LOC106587536 coding upstream 43949 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 146484 73744899 ~ 73789243 (+)
copb1 copb coding upstream 194110 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 203887 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 300779 73616828 ~ 73634948 (+)
LOC118965098 NA coding downstream 373101 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 375402 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 377697 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 379962 74315901 ~ 74315955 (+)
LOC118965102 NA coding downstream 382262 74318201 ~ 74318255 (+)
G543997 NA non-coding upstream 164230 73771170 ~ 73771497 (+)
G543978 NA non-coding upstream 210051 73725207 ~ 73725676 (+)
G543890 NA non-coding upstream 299123 73634966 ~ 73636604 (+)
G543822 NA non-coding upstream 373134 73562367 ~ 73562593 (+)
G544407 NA non-coding downstream 99541 74035480 ~ 74035734 (+)
G544423 NA non-coding downstream 124926 74060865 ~ 74061122 (+)
G544424 NA non-coding downstream 126754 74062693 ~ 74063015 (+)
G544427 NA non-coding downstream 135722 74071661 ~ 74071882 (+)
G544490 NA non-coding downstream 229227 74165166 ~ 74166823 (+)
LOC100136290 sox6 other upstream 548040 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 790380 73037953 ~ 73182742 (+)
G542890 NA other upstream 1168876 72765681 ~ 72766851 (+)
saa saa other upstream 1268855 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1783333 72151020 ~ 72152394 (+)
G544565 NA other downstream 351839 74287778 ~ 74288138 (+)
G545485 NA other downstream 1301861 75237800 ~ 75238164 (+)
G545601 NA other downstream 1485922 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1992289 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2951493 76827001 ~ 77038395 (+)

Expression


Co-expression Network