G544407


Basic Information

Item Value
gene id G544407
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74035480 ~ 74035734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616440
TTgcagtcatctctcctccttccaggctttttcttctttggactttatatggcgattggcatctGACTTTCATAATAAGGTGTATTACCACAACCAACCGACAAAAcatcagttcatctttcaatcacccatgtgggtataaccaatgaggagatggcacgtgggtatatgcttctataaaccaatgaggagataggagaggcaggacttgcacctCGTTCAGCGTTCTATTTTAGCACTTGGCAACGCAGATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616440 True 255 lncRNA 0.44 1 74035480 74035734

Neighbor

gene id symbol gene type direction distance location
tub LOC106587536 coding upstream 143702 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 246237 73744899 ~ 73789243 (+)
copb1 copb coding upstream 293863 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 303640 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 400532 73616828 ~ 73634948 (+)
LOC118965098 NA coding downstream 273306 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 275607 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 277902 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 280167 74315901 ~ 74315955 (+)
LOC118965102 NA coding downstream 282467 74318201 ~ 74318255 (+)
G544292 NA non-coding upstream 99541 73935727 ~ 73935939 (+)
G543997 NA non-coding upstream 263983 73771170 ~ 73771497 (+)
G543978 NA non-coding upstream 309804 73725207 ~ 73725676 (+)
G543890 NA non-coding upstream 398876 73634966 ~ 73636604 (+)
G544423 NA non-coding downstream 25131 74060865 ~ 74061122 (+)
G544424 NA non-coding downstream 26959 74062693 ~ 74063015 (+)
G544427 NA non-coding downstream 35927 74071661 ~ 74071882 (+)
G544490 NA non-coding downstream 129432 74165166 ~ 74166823 (+)
G544495 LOC106587540 non-coding downstream 135941 74171675 ~ 74188595 (+)
LOC100136290 sox6 other upstream 647793 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 890133 73037953 ~ 73182742 (+)
G542890 NA other upstream 1268629 72765681 ~ 72766851 (+)
saa saa other upstream 1368608 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1883086 72151020 ~ 72152394 (+)
G544565 NA other downstream 252044 74287778 ~ 74288138 (+)
G545485 NA other downstream 1202066 75237800 ~ 75238164 (+)
G545601 NA other downstream 1386127 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1892494 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2851698 76827001 ~ 77038395 (+)

Expression


Co-expression Network