G544427


Basic Information

Item Value
gene id G544427
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74071661 ~ 74071882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616460
gtacagctgtgtgtcatccgcatagcagtgaaagttgccatgatgttttcaaatgacatccccaggaggtaaaatatatagtgaaaacaatagtggtcctaaaacggaaccttgaggaacaccgacatttttatttttttttttaccccctttttctccccaatttcgtggtatccaattgttagtagctactatcttgtcttatcgctacaactcccatac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616460 True 222 lncRNA 0.39 1 74071661 74071882

Neighbor

gene id symbol gene type direction distance location
tub LOC106587536 coding upstream 179883 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 282418 73744899 ~ 73789243 (+)
copb1 copb coding upstream 330044 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 339821 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 436713 73616828 ~ 73634948 (+)
LOC118965098 NA coding downstream 237158 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 239459 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 241754 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 244019 74315901 ~ 74315955 (+)
LOC118965102 NA coding downstream 246319 74318201 ~ 74318255 (+)
G544424 NA non-coding upstream 8646 74062693 ~ 74063015 (+)
G544423 NA non-coding upstream 10539 74060865 ~ 74061122 (+)
G544407 NA non-coding upstream 35927 74035480 ~ 74035734 (+)
G544292 NA non-coding upstream 135722 73935727 ~ 73935939 (+)
G544490 NA non-coding downstream 93284 74165166 ~ 74166823 (+)
G544495 LOC106587540 non-coding downstream 99793 74171675 ~ 74188595 (+)
G544493 NA non-coding downstream 110521 74182403 ~ 74182729 (+)
G544492 LOC106587540 non-coding downstream 132753 74204635 ~ 74205871 (+)
G544519 NA non-coding downstream 173141 74245023 ~ 74245748 (+)
LOC100136290 sox6 other upstream 683974 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 926314 73037953 ~ 73182742 (+)
G542890 NA other upstream 1304810 72765681 ~ 72766851 (+)
saa saa other upstream 1404789 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1919267 72151020 ~ 72152394 (+)
G544565 NA other downstream 215896 74287778 ~ 74288138 (+)
G545485 NA other downstream 1165918 75237800 ~ 75238164 (+)
G545601 NA other downstream 1349979 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1856346 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2815550 76827001 ~ 77038395 (+)

Expression


Co-expression Network