G544495 (LOC106587540)


Basic Information

Item Value
gene id G544495
gene name LOC106587540
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74171675 ~ 74188595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616535
TGGGCGTTATACTGCTGACCAGTAACAGGAAGGCCACTCCCCAGCCCAGTGTCTAACAGAGAGATGGAATGTGACAGTGGAATAGCCTCTAATCTGTAGCCTCAAGCTAACAAAATCAGAAGCGCAGAATGAGGAGGAAATTAATAGAGCCAATACATTAAACCTGGTCTAAGAAAAGCAAGACAGTGGGAGACAAAGATgaaaagccagagagagagagatggagaaaatgaAGTACCAACCTCTTCCACAGGCAGGTCTTTGAGTTTGGGCAGTGAGCTGGACAGGAGCCCCACCAGGAAGGGCGTGGGGCAGCAGACGATGTCCACCATGGAGGCAGGCAGGACGGGGATGAAGGTGTGCTGCCAGGAGAAGGGATAGAGCAGAGCCACCACCGCGTGCATACAGCTGGACAGGGTaCTGAGTTTATCAGCCACAAAGATGACTCTGCGCTCCAGCAGCAGGGAGGCGAAGACCTGCACCACCTGACGCACGCTCAGGCAGCTGAAAAGACTGTCAAAGTCTACATGCTCCAGTCTGGAGTCCATGGGCCGCCTCAGCTCAATGACCTCATTCCCTGCTCCAGGCAGGAAGGTCTTGACTTTGATGGTCTTCCCCGGCGCTGGGAAGGGTGACTCCATCAGACTCCTCATGAAGGGGTAGACCAGGGCTGCAGAGATCCCCCTCCGCCTCTCCACCTCATCCAGGATCTTGGAGAACAGGTGGAAACAGCCCAGTCGGCTGATGACGCAGTACACCTCAGGAAGGCGAGGCCCTTTCCCACTAGGCAGCAGACGCCTGCAGTACCCAAACCTCCTGCTGCCATCCTCTCCAGTCAACATGAACGAGAAGGTCTCActgctgtaTTCAGACACTGGGGTCCAGTCCTTGGCATCTGGAAAGCAGAACTGGGGGATGGCTTTGAGTCTCTGCTCTGCCTCCCTCATCAGCTTGGTGGGCCTCTCTAGCTTGGGGAACTGGTAGGTGACTTCGGGAAAGAAGGAGTTTTTGGTGGGCTTCTTCTTGAGGGACACGACCACAAAGTACTCAAACAGCTCCCTCTCCTGCCACTCAATCAGCTGCAGCTCCAGTGTGCGGTAGCTAGGGGCCCTCCTCAGCATTGACTGCAGCTTCAGCAGCCTCTGGGTGTGggctggggagagaagagagagggatatggaCAGTTCAACCTTCAGTACAGGGTTGTATTGACAAACACG

Function

NR:

description
PREDICTED: suppression of tumorigenicity 5 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616535 True 1220 lncRNA 0.55 7 74171675 74188595

Neighbor

gene id symbol gene type direction distance location
tub LOC106587536 coding upstream 279897 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 382432 73744899 ~ 73789243 (+)
copb1 copb coding upstream 430058 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 439835 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 536727 73616828 ~ 73634948 (+)
LOC118965098 NA coding downstream 120445 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 122746 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 125041 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 127306 74315901 ~ 74315955 (+)
LOC118965102 NA coding downstream 129606 74318201 ~ 74318255 (+)
G544490 NA non-coding upstream 4852 74165166 ~ 74166823 (+)
G544427 NA non-coding upstream 99793 74071661 ~ 74071882 (+)
G544424 NA non-coding upstream 108660 74062693 ~ 74063015 (+)
G544423 NA non-coding upstream 110553 74060865 ~ 74061122 (+)
G544407 NA non-coding upstream 135941 74035480 ~ 74035734 (+)
G544492 LOC106587540 non-coding downstream 16040 74204635 ~ 74205871 (+)
G544519 NA non-coding downstream 56428 74245023 ~ 74245748 (+)
G544554 NA non-coding downstream 83215 74271810 ~ 74272210 (+)
G544559 NA non-coding downstream 93118 74281713 ~ 74282320 (+)
G544560 NA non-coding downstream 93835 74282430 ~ 74282920 (+)
LOC100136290 sox6 other upstream 783988 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1026328 73037953 ~ 73182742 (+)
G542890 NA other upstream 1404824 72765681 ~ 72766851 (+)
saa saa other upstream 1504803 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 2019281 72151020 ~ 72152394 (+)
G544565 NA other downstream 99183 74287778 ~ 74288138 (+)
G545485 NA other downstream 1049205 75237800 ~ 75238164 (+)
G545601 NA other downstream 1233266 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1739633 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2698837 76827001 ~ 77038395 (+)

Expression


Co-expression Network