G544493


Basic Information

Item Value
gene id G544493
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74182403 ~ 74182729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616533
CCCACAGCACAGGACAGGGGGTTGAGAGTTAGACTACACAGCACAGGACAGGGGGTTGAGAGTTAGACCACACAGCACAGGCCAGGGGGTTGAGAGTTAGACCACACAGCACAGGACAGGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616533 True 123 lncRNA 0.59 3 74182403 74182729

Neighbor

gene id symbol gene type direction distance location
tub LOC106587536 coding upstream 290625 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 393160 73744899 ~ 73789243 (+)
copb1 copb coding upstream 440786 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 450563 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 547455 73616828 ~ 73634948 (+)
LOC118965098 NA coding downstream 126311 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 128612 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 130907 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 133172 74315901 ~ 74315955 (+)
LOC118965102 NA coding downstream 135472 74318201 ~ 74318255 (+)
G544490 NA non-coding upstream 15580 74165166 ~ 74166823 (+)
G544427 NA non-coding upstream 110521 74071661 ~ 74071882 (+)
G544424 NA non-coding upstream 119388 74062693 ~ 74063015 (+)
G544423 NA non-coding upstream 121281 74060865 ~ 74061122 (+)
G544407 NA non-coding upstream 146669 74035480 ~ 74035734 (+)
G544492 LOC106587540 non-coding downstream 21906 74204635 ~ 74205871 (+)
G544519 NA non-coding downstream 62294 74245023 ~ 74245748 (+)
G544554 NA non-coding downstream 89081 74271810 ~ 74272210 (+)
G544559 NA non-coding downstream 98984 74281713 ~ 74282320 (+)
G544560 NA non-coding downstream 99701 74282430 ~ 74282920 (+)
LOC100136290 sox6 other upstream 794716 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1037056 73037953 ~ 73182742 (+)
G542890 NA other upstream 1415552 72765681 ~ 72766851 (+)
saa saa other upstream 1515531 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 2030009 72151020 ~ 72152394 (+)
G544565 NA other downstream 105049 74287778 ~ 74288138 (+)
G545485 NA other downstream 1055071 75237800 ~ 75238164 (+)
G545601 NA other downstream 1239132 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1745499 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2704703 76827001 ~ 77038395 (+)

Expression


Co-expression Network