G544559


Basic Information

Item Value
gene id G544559
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74281713 ~ 74282320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616605
CTCAAAGGTGATCTCCTGAGTGTGCTTGGGGACCTGGAGCACCCCGGTCTCAGCCAGCTCCCCAGAAACACACACCCAGGGGTTGGCTGTGAACATGGAGCCTCCTAGTTTCTTACTGGGAATCACCAGCACATGGTATGGGATCAGATGGTTGTGAAGACATTGGTGAAACAGAAGTAGTCCACAGCattgaaggagaggaggtggTACAGGAACTGCTCTTTCTCATCGTCACAGCGCAGAAAAGCATAACGCTTGTATAGTTTCCTGCAAAAGAaacaaaagcaacaaaaaaaaatcacaaaaaaaacTAAGTTTAGCATTTCATATGATGTAATGATCATAGATTGAACAATAACAGTCTGAAG

Function

NR:

description
LOW QUALITY PROTEIN: DENN domain-containing protein 5A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616605 True 368 lncRNA 0.45 2 74281713 74282320

Neighbor

gene id symbol gene type direction distance location
tub LOC106587536 coding upstream 389935 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 492470 73744899 ~ 73789243 (+)
copb1 copb coding upstream 540096 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 549873 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 646765 73616828 ~ 73634948 (+)
LOC118965098 NA coding downstream 26720 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 29021 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 31316 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 33581 74315901 ~ 74315955 (+)
LOC118965102 NA coding downstream 35881 74318201 ~ 74318255 (+)
G544554 NA non-coding upstream 9503 74271810 ~ 74272210 (+)
G544519 NA non-coding upstream 35965 74245023 ~ 74245748 (+)
G544492 LOC106587540 non-coding upstream 75842 74204635 ~ 74205871 (+)
G544495 LOC106587540 non-coding upstream 93118 74171675 ~ 74188595 (+)
G544493 NA non-coding upstream 98984 74182403 ~ 74182729 (+)
G544560 NA non-coding downstream 110 74282430 ~ 74282920 (+)
G544563 NA non-coding downstream 4261 74286581 ~ 74286851 (+)
G544564 NA non-coding downstream 5007 74287327 ~ 74287667 (+)
G544567 LOC106587543 non-coding downstream 8658 74290978 ~ 74291200 (+)
G544568 NA non-coding downstream 9066 74291386 ~ 74291658 (+)
LOC100136290 sox6 other upstream 894026 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1136366 73037953 ~ 73182742 (+)
G542890 NA other upstream 1514862 72765681 ~ 72766851 (+)
saa saa other upstream 1614841 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 2129319 72151020 ~ 72152394 (+)
G544565 NA other downstream 5458 74287778 ~ 74288138 (+)
G545485 NA other downstream 955480 75237800 ~ 75238164 (+)
G545601 NA other downstream 1139541 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1645908 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2605112 76827001 ~ 77038395 (+)

Expression


Co-expression Network