G544560


Basic Information

Item Value
gene id G544560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74282430 ~ 74282920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616607
ACATTGTAAATGTTTAATAGGTGATTGTACTATGACGTTTGGATCTGTCAAAAGAGCTCATGTATTATACATGCATAGTTTTCAGACATCAGGTTGATTCATGTGTGTGAGACTGAGTGGGACATTCCAATAAAAACTAGTGAGGATTTATGAGGAGACTGACTTAAAGAGAATGGGGTATTATCCCAATTACTGAAGCAGAGGCTCTTACAAAAAGTACACATGTTGTGTTTAGCTTGATTTGCCAGTTGTATACTAGGTCCTTGTTGTTTTGCTCACTTTGTAAGTTCATGGTCAGACAGCAGCTTTTTGAGGTGCCTGGACAGTAGCTTCTTCTCCATGGAGAGCCTCACCCAGGCCCTGGCCTTGCCCACGTCTGTCTTGATCTCCCCAATGTTCTGGATGTGTCTACGGAGGATATAGTACACAGCACAGAGGTCAGAGGAGAAaaacatacacaaatacacacatatacaaacagtCATCCTTTC

Function

NR:

description
PREDICTED: DENN domain-containing protein 5A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616607 True 491 lncRNA 0.42 1 74282430 74282920

Neighbor

gene id symbol gene type direction distance location
tub LOC106587536 coding upstream 390652 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 493187 73744899 ~ 73789243 (+)
copb1 copb coding upstream 540813 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 550590 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 647482 73616828 ~ 73634948 (+)
LOC118965098 NA coding downstream 26120 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 28421 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 30716 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 32981 74315901 ~ 74315955 (+)
LOC118965102 NA coding downstream 35281 74318201 ~ 74318255 (+)
G544559 NA non-coding upstream 110 74281713 ~ 74282320 (+)
G544554 NA non-coding upstream 10220 74271810 ~ 74272210 (+)
G544519 NA non-coding upstream 36682 74245023 ~ 74245748 (+)
G544492 LOC106587540 non-coding upstream 76559 74204635 ~ 74205871 (+)
G544495 LOC106587540 non-coding upstream 93835 74171675 ~ 74188595 (+)
G544563 NA non-coding downstream 3661 74286581 ~ 74286851 (+)
G544564 NA non-coding downstream 4407 74287327 ~ 74287667 (+)
G544567 LOC106587543 non-coding downstream 8058 74290978 ~ 74291200 (+)
G544568 NA non-coding downstream 8466 74291386 ~ 74291658 (+)
G544569 NA non-coding downstream 10027 74292947 ~ 74293257 (+)
LOC100136290 sox6 other upstream 894743 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1137083 73037953 ~ 73182742 (+)
G542890 NA other upstream 1515579 72765681 ~ 72766851 (+)
saa saa other upstream 1615558 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 2130036 72151020 ~ 72152394 (+)
G544565 NA other downstream 4858 74287778 ~ 74288138 (+)
G545485 NA other downstream 954880 75237800 ~ 75238164 (+)
G545601 NA other downstream 1138941 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1645308 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2604512 76827001 ~ 77038395 (+)

Expression


Co-expression Network