G544564


Basic Information

Item Value
gene id G544564
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74287327 ~ 74287667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616611
GCTTGAGATGCATGGCTATGAGGCTGATGTCAGTATTTTTCCAATACATATGGTCTTGAATCATTGATAATATTCTGTCTTGACTGAAAGTGTTTTTTGTCAGTGGGCCACAAGATGGCAGTGAAAACACTTTGAAATCATTGCATTCTGAGGTATGATCAATCAATCATTATCTCACCTTGATTCGAAATTGTCATTTTCAAAGAAGTACGTAGAGGTACGAAGGCATACATTTGAACCACTTCTGCCGCTACAGAAGGGACAATCAACACAGGCAGAATAGTATAGTATCACTTGCAACATTCCCCTTACAACCATCCATCATTTCAAGACCATATGAC

Function

NR:

description
PREDICTED: DENN domain-containing protein 5A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616611 True 341 lncRNA 0.39 1 74287327 74287667

Neighbor

gene id symbol gene type direction distance location
tub LOC106587536 coding upstream 395549 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 498084 73744899 ~ 73789243 (+)
copb1 copb coding upstream 545710 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 555487 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 652379 73616828 ~ 73634948 (+)
LOC118965098 NA coding downstream 21373 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 23674 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 25969 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 28234 74315901 ~ 74315955 (+)
LOC118965102 NA coding downstream 30534 74318201 ~ 74318255 (+)
G544563 NA non-coding upstream 476 74286581 ~ 74286851 (+)
G544560 NA non-coding upstream 4407 74282430 ~ 74282920 (+)
G544559 NA non-coding upstream 5007 74281713 ~ 74282320 (+)
G544554 NA non-coding upstream 15117 74271810 ~ 74272210 (+)
G544519 NA non-coding upstream 41579 74245023 ~ 74245748 (+)
G544567 LOC106587543 non-coding downstream 3311 74290978 ~ 74291200 (+)
G544568 NA non-coding downstream 3719 74291386 ~ 74291658 (+)
G544569 NA non-coding downstream 5280 74292947 ~ 74293257 (+)
G544571 NA non-coding downstream 7691 74295358 ~ 74295852 (+)
G544521 dennd5a non-coding downstream 11212 74298879 ~ 74299518 (+)
LOC100136290 sox6 other upstream 899640 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1141980 73037953 ~ 73182742 (+)
G542890 NA other upstream 1520476 72765681 ~ 72766851 (+)
saa saa other upstream 1620455 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 2134933 72151020 ~ 72152394 (+)
G544565 NA other downstream 111 74287778 ~ 74288138 (+)
G545485 NA other downstream 950133 75237800 ~ 75238164 (+)
G545601 NA other downstream 1134194 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1640561 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2599765 76827001 ~ 77038395 (+)

Expression


Co-expression Network