G544567 (LOC106587543)


Basic Information

Item Value
gene id G544567
gene name LOC106587543
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74290978 ~ 74291200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616614
CGCCTCGTCGATATTGGTGCAGGTCTGGTACATGGAGGTGCGCAGGGTGGGCGTGCGCACGTTCAGCATGCGGATTTTGTCCACGCGGGAGTCAAACACCCTCAACGTGTGTTCCTTGTCCTCAtcatcatggcaaaggatctTACTATCGATGAAGGAGGCGAACATCTGAGTCTCCAGGAAACGGGACAGGAAGGGCAGGTAGGGCTCAGGCTGGTCAGAG

Function

NR:

description
PREDICTED: DENN domain-containing protein 5A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616614 True 223 lncRNA 0.57 1 74290978 74291200

Neighbor

gene id symbol gene type direction distance location
tub LOC106587536 coding upstream 399200 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 501735 73744899 ~ 73789243 (+)
copb1 copb coding upstream 549361 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 559138 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 656030 73616828 ~ 73634948 (+)
LOC118965098 NA coding downstream 17840 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 20141 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 22436 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 24701 74315901 ~ 74315955 (+)
LOC118965102 NA coding downstream 27001 74318201 ~ 74318255 (+)
G544564 NA non-coding upstream 3311 74287327 ~ 74287667 (+)
G544563 NA non-coding upstream 4127 74286581 ~ 74286851 (+)
G544560 NA non-coding upstream 8058 74282430 ~ 74282920 (+)
G544559 NA non-coding upstream 8658 74281713 ~ 74282320 (+)
G544554 NA non-coding upstream 18768 74271810 ~ 74272210 (+)
G544568 NA non-coding downstream 186 74291386 ~ 74291658 (+)
G544569 NA non-coding downstream 1747 74292947 ~ 74293257 (+)
G544571 NA non-coding downstream 4158 74295358 ~ 74295852 (+)
G544521 dennd5a non-coding downstream 7679 74298879 ~ 74299518 (+)
G544580 NA non-coding downstream 23142 74314342 ~ 74316857 (+)
G544565 NA other upstream 2840 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 903291 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1145631 73037953 ~ 73182742 (+)
G542890 NA other upstream 1524127 72765681 ~ 72766851 (+)
saa saa other upstream 1624106 72665460 ~ 72666872 (+)
G545485 NA other downstream 946600 75237800 ~ 75238164 (+)
G545601 NA other downstream 1130661 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1637028 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2596232 76827001 ~ 77038395 (+)
G547884 NA other downstream 2986792 77277992 ~ 77279354 (+)

Expression


Co-expression Network