G544521 (dennd5a)


Basic Information

Item Value
gene id G544521
gene name dennd5a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74298879 ~ 74299518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616565
GACGTTCTCCACACCCAGCAGCTCAAACACCTGGCTGATAGGGAAGTCAAAGAGAGGCAGCTCTGCCGTGCTGGGCCTCTGGCACACCACTGGCCCATACACCCCCGAGAACTTCAGGGAGCGCCCAGCGGGAGGCAGGGGCACCTCGTACAGGATGTTGTAGACGTAGCTCTCcaaggggaggggtgggggctgGATGGAGGAGACGGCCTGGTGGAGCTGCTGGAGCACCTTCCTGCAGGCCTGGGGGAAGGCCATGGGCGCGATGAGGCAGATGCACTTGGACACGTAGAGCGTGTCGCGGCTGATGTCGTAGGAGTTGAAGCGCTGCAGCCGGGAGATGGAGGGCGTGGGGAGGAGCGTGTGTTGGGGGTGGGGGTTGAGAGGGTGGGGTTGGAGGTGGCACTGGTCCTCGGGGCACCGCGGGGTGGTGGGGGTGTGCAGGATGTCGTATTGTTCAGCATTGTGCATGTGGTACAGGGTCTGCATGGCGCTGCAGATCTGCTTGCTGGTCACCTCCTCGTAGAAAGTGAGGGCGAAGCCATACGTCCGCGAGCCATCCTCCCGAGTGATGATGAAGGAGTGGAACTGAGGCTCACGTGTGTCGGCCTGCGTGCGGAAGGCCAGACCCTTTGGCATA

Function

symbol description
dennd5a Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 49. Orthologous to human DENND5A (DENN domain containing 5A).

NR:

description
DENN domain-containing protein 5A-like isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616565 True 640 lncRNA 0.63 1 74298879 74299518

Neighbor

gene id symbol gene type direction distance location
tub LOC106587536 coding upstream 407101 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 509636 73744899 ~ 73789243 (+)
copb1 copb coding upstream 557262 73733797 ~ 73741617 (+)
LOC110526547 LOC106587501 coding upstream 567039 73726127 ~ 73731840 (+)
LOC110526546 LOC106587531 coding upstream 663931 73616828 ~ 73634948 (+)
LOC118965098 NA coding downstream 9522 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 11823 74311341 ~ 74311395 (+)
LOC118965100 NA coding downstream 14118 74313636 ~ 74313690 (+)
LOC118965101 NA coding downstream 16383 74315901 ~ 74315955 (+)
LOC118965102 NA coding downstream 18683 74318201 ~ 74318255 (+)
G544571 NA non-coding upstream 3027 74295358 ~ 74295852 (+)
G544569 NA non-coding upstream 5622 74292947 ~ 74293257 (+)
G544568 NA non-coding upstream 7221 74291386 ~ 74291658 (+)
G544567 LOC106587543 non-coding upstream 7679 74290978 ~ 74291200 (+)
G544564 NA non-coding upstream 11212 74287327 ~ 74287667 (+)
G544580 NA non-coding downstream 14824 74314342 ~ 74316857 (+)
G544586 NA non-coding downstream 25392 74324910 ~ 74325244 (+)
G544591 NA non-coding downstream 34084 74333602 ~ 74333932 (+)
G544754 NA non-coding downstream 166306 74465824 ~ 74466025 (+)
G544756 LOC105416325 non-coding downstream 168109 74467627 ~ 74467972 (+)
G544565 NA other upstream 10741 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 911192 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1153532 73037953 ~ 73182742 (+)
G542890 NA other upstream 1532028 72765681 ~ 72766851 (+)
saa saa other upstream 1632007 72665460 ~ 72666872 (+)
G545485 NA other downstream 938282 75237800 ~ 75238164 (+)
G545601 NA other downstream 1122343 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1628710 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2587914 76827001 ~ 77038395 (+)
G547884 NA other downstream 2978474 77277992 ~ 77279354 (+)

Expression


Co-expression Network