G544580


Basic Information

Item Value
gene id G544580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74314342 ~ 74316857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616630
tacctatctatgtgagagtggattctcggccctcactagcatgaaaactaaatacaagcacagactgtgtgtgggaaatgatttaaaactgagactctctctaatacaacccaacattgcagagttatgtgcatcctttcaagcacagccttatcattaacctgtggtgagttattcgcaatttttgatgaacaaataaggttctATATGTAAGac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616630 True 216 lncRNA 0.38 2 74314342 74316857

Neighbor

gene id symbol gene type direction distance location
LOC118965100 NA coding upstream 652 74313636 ~ 74313690 (+)
LOC118965099 NA coding upstream 2947 74311341 ~ 74311395 (+)
LOC118965098 NA coding upstream 5248 74309040 ~ 74309094 (+)
tub LOC106587536 coding upstream 422564 73793635 ~ 73891981 (+)
rras2 rras2 coding upstream 525099 73744899 ~ 73789243 (+)
LOC118965102 NA coding downstream 1344 74318201 ~ 74318255 (+)
LOC118965103 NA coding downstream 3227 74320084 ~ 74320138 (+)
ipo7 LOC106562356 coding downstream 28477 74345334 ~ 74362749 (+)
LOC118965113 NA coding downstream 38572 74355429 ~ 74355606 (+)
LOC118965110 NA coding downstream 43679 74360536 ~ 74360679 (+)
G544521 dennd5a non-coding upstream 14824 74298879 ~ 74299518 (+)
G544571 NA non-coding upstream 18490 74295358 ~ 74295852 (+)
G544569 NA non-coding upstream 21085 74292947 ~ 74293257 (+)
G544568 NA non-coding upstream 22684 74291386 ~ 74291658 (+)
G544567 LOC106587543 non-coding upstream 23142 74290978 ~ 74291200 (+)
G544586 NA non-coding downstream 8053 74324910 ~ 74325244 (+)
G544591 NA non-coding downstream 16745 74333602 ~ 74333932 (+)
G544754 NA non-coding downstream 148967 74465824 ~ 74466025 (+)
G544756 LOC105416325 non-coding downstream 150770 74467627 ~ 74467972 (+)
G544757 NA non-coding downstream 151407 74468264 ~ 74468808 (+)
G544565 NA other upstream 26204 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 926655 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1168995 73037953 ~ 73182742 (+)
G542890 NA other upstream 1547491 72765681 ~ 72766851 (+)
saa saa other upstream 1647470 72665460 ~ 72666872 (+)
G545485 NA other downstream 920943 75237800 ~ 75238164 (+)
G545601 NA other downstream 1105004 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1611371 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2570575 76827001 ~ 77038395 (+)
G547884 NA other downstream 2961135 77277992 ~ 77279354 (+)

Expression


Co-expression Network