G544586


Basic Information

Item Value
gene id G544586
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74324910 ~ 74325244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616636
aaactacacattttagagtgcacctgtgtaatgatcatgctgtttaatcagcttcttgatatgccactccggtcaggtggatggattatcttggcaaatgagaaaggcccactaacagggatgttaacaaatgtgtgcacaacatttgagagaaataagctttttgtgtgtatggaacatttctgggatcctttatttcagctcatgaaacatgggaccaacattttacatattgcgttaatatttttgttcagtgtagaaataTGCCTTTTATAATCTCAGAATATAGAGAAGTATTATGTGTATTGCTCAATAAAGGATGGCTTGGCTTCTTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616636 True 335 lncRNA 0.36 1 74324910 74325244

Neighbor

gene id symbol gene type direction distance location
LOC118965103 NA coding upstream 4772 74320084 ~ 74320138 (+)
LOC118965102 NA coding upstream 6655 74318201 ~ 74318255 (+)
LOC118965101 NA coding upstream 8955 74315901 ~ 74315955 (+)
LOC118965100 NA coding upstream 11220 74313636 ~ 74313690 (+)
LOC118965099 NA coding upstream 13515 74311341 ~ 74311395 (+)
ipo7 LOC106562356 coding downstream 20090 74345334 ~ 74362749 (+)
LOC118965113 NA coding downstream 30185 74355429 ~ 74355606 (+)
LOC118965110 NA coding downstream 35292 74360536 ~ 74360679 (+)
LOC110526565 LOC106562357 coding downstream 37871 74363115 ~ 74378029 (+)
LOC110526567 wee1 coding downstream 64538 74389782 ~ 74395037 (+)
G544580 NA non-coding upstream 8053 74314342 ~ 74316857 (+)
G544521 dennd5a non-coding upstream 25392 74298879 ~ 74299518 (+)
G544571 NA non-coding upstream 29058 74295358 ~ 74295852 (+)
G544569 NA non-coding upstream 31653 74292947 ~ 74293257 (+)
G544568 NA non-coding upstream 33252 74291386 ~ 74291658 (+)
G544591 NA non-coding downstream 8358 74333602 ~ 74333932 (+)
G544754 NA non-coding downstream 140580 74465824 ~ 74466025 (+)
G544756 LOC105416325 non-coding downstream 142383 74467627 ~ 74467972 (+)
G544757 NA non-coding downstream 143020 74468264 ~ 74468808 (+)
G544758 NA non-coding downstream 144738 74469982 ~ 74470458 (+)
G544565 NA other upstream 36772 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 937223 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1179563 73037953 ~ 73182742 (+)
G542890 NA other upstream 1558059 72765681 ~ 72766851 (+)
saa saa other upstream 1658038 72665460 ~ 72666872 (+)
G545485 NA other downstream 912556 75237800 ~ 75238164 (+)
G545601 NA other downstream 1096617 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1602984 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2562188 76827001 ~ 77038395 (+)
G547884 NA other downstream 2952748 77277992 ~ 77279354 (+)

Expression


Co-expression Network