G544591


Basic Information

Item Value
gene id G544591
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74333602 ~ 74333932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616643
TGCAGAATTATTCTTATTGGTTCACCAGCCCGTTCCCGACACTTACCGGATAGTTCATCTGGTTCAAGCCCGCTTTCAGTGTCAAGTCCGCAGATAACAAAATAATCTGCGAATCGACATGAATTCGAGCTGAAGCCGGTGGTCATTTTGAGACTGGTCCCGTGGTACCCTTTTCCTCTGCTTTGTCAGTTGGGTGCATATTAAATTATCGCGTAGTGTTTTCGCGCAGCCATCGTGGATGTACTGCAAAGCCTGAAAATCAGAACAGAATGCCAGCCGAAATGCATTATGGGTCTTCAAGTACAGCTGTTTTCATCGGTCTCAGATCTTC
>TU616641
CGGATAGTTCATCTGGTTCAAGCCCGCTTTCAGTGTCAAGTCCGCAGATAACAAAATAATCTGCGAATCGACATGAATTCGAGCTGAAGCCGGTGGTCATTTTGAGACTGGTCCCGTGGTACCCTTTTCCTCTGCTTTGTCAGTTGGGTGCATATTAAATTATCGCGTAGTGTTTTCGCGCAGCCATCGTGGATGTACTGCAAAGCCTGAAAATCAGAACAGAATGCCAGCCGAAATGCATTATG
>TU616642
CGGATAGTTCATCTGGTTCAAGCCCGCTTTCAGTGTCAAGTCCGCAGATAACAAAATAATCTGCGAATCGACATGAATTCGAGCTGAAGCCGGTGGTCATTTTGAGACTGGTCCCGTGGTACCCTTTTCCTCTGCTTTGTCAGTTGGGTGCATATTAAATTATCGCGTAGTGTTTTCGCGCAGCCATCGTGGATGTACTGCAAAGCCTGAAAATCAGAACAGAATGCCAGCCGAAATGCATTATGGGTCTTCAAGTACAGCTGTTTTCATCGGTCTCAGATCTTC

Function

NR:

description
DENN domain-containing protein 5A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616643 False 331 lncRNA 0.46 1 74333602 74333932
TU616641 False 245 lncRNA 0.47 1 74333648 74333892
TU616642 True 285 lncRNA 0.46 1 74333648 74333932

Neighbor

gene id symbol gene type direction distance location
LOC118965103 NA coding upstream 13464 74320084 ~ 74320138 (+)
LOC118965102 NA coding upstream 15347 74318201 ~ 74318255 (+)
LOC118965101 NA coding upstream 17647 74315901 ~ 74315955 (+)
LOC118965100 NA coding upstream 19912 74313636 ~ 74313690 (+)
LOC118965099 NA coding upstream 22207 74311341 ~ 74311395 (+)
ipo7 LOC106562356 coding downstream 11402 74345334 ~ 74362749 (+)
LOC118965113 NA coding downstream 21497 74355429 ~ 74355606 (+)
LOC118965110 NA coding downstream 26604 74360536 ~ 74360679 (+)
LOC110526565 LOC106562357 coding downstream 29183 74363115 ~ 74378029 (+)
LOC110526567 wee1 coding downstream 55850 74389782 ~ 74395037 (+)
G544586 NA non-coding upstream 8358 74324910 ~ 74325244 (+)
G544580 NA non-coding upstream 16745 74314342 ~ 74316857 (+)
G544521 dennd5a non-coding upstream 34084 74298879 ~ 74299518 (+)
G544571 NA non-coding upstream 37750 74295358 ~ 74295852 (+)
G544569 NA non-coding upstream 40345 74292947 ~ 74293257 (+)
G544754 NA non-coding downstream 131892 74465824 ~ 74466025 (+)
G544756 LOC105416325 non-coding downstream 133695 74467627 ~ 74467972 (+)
G544757 NA non-coding downstream 134332 74468264 ~ 74468808 (+)
G544758 NA non-coding downstream 136050 74469982 ~ 74470458 (+)
G544761 NA non-coding downstream 146226 74480158 ~ 74480412 (+)
G544565 NA other upstream 45464 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 945915 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1188255 73037953 ~ 73182742 (+)
G542890 NA other upstream 1566751 72765681 ~ 72766851 (+)
saa saa other upstream 1666730 72665460 ~ 72666872 (+)
G545485 NA other downstream 903868 75237800 ~ 75238164 (+)
G545601 NA other downstream 1087929 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1594296 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2553500 76827001 ~ 77038395 (+)
G547884 NA other downstream 2944060 77277992 ~ 77279354 (+)

Expression


Co-expression Network