G544754


Basic Information

Item Value
gene id G544754
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74465824 ~ 74466025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616838
cattcacgcaccgtaacagaagaatccgaccaagaatggacccagcgacttcggatcctctccactcagccgtcgagatccagggagcgatgctaggcagatacgagcaggaattgtctgctgctcgacatgccgttgagaccctggccacccaagtctccaacctcacagaacaggttcaccatctccgcctcgatccacc

Function

NR:

description
PREDICTED: protein LDOC1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616838 True 202 lncRNA 0.57 1 74465824 74466025

Neighbor

gene id symbol gene type direction distance location
LOC110526569 LOC106562354 coding upstream 2010 74443137 ~ 74463814 (+)
LOC110526568 LOC106587550 coding upstream 35147 74395368 ~ 74430677 (+)
LOC110526567 wee1 coding upstream 70787 74389782 ~ 74395037 (+)
LOC110526565 LOC106562357 coding upstream 87795 74363115 ~ 74378029 (+)
ipo7 LOC106562356 coding upstream 103075 74345334 ~ 74362749 (+)
LOC110526570 cyp1a3 coding downstream 39019 74505044 ~ 74509032 (+)
LOC110526571 LOC106562351 coding downstream 43422 74509447 ~ 74536436 (+)
LOC110526572 LOC106562350 coding downstream 70920 74536945 ~ 74580991 (+)
LOC110515568 LOC106587555 coding downstream 135489 74601514 ~ 74607809 (+)
LOC110526573 LOC106594537 coding downstream 143366 74609391 ~ 74612035 (+)
G544591 NA non-coding upstream 131892 74333602 ~ 74333932 (+)
G544586 NA non-coding upstream 140580 74324910 ~ 74325244 (+)
G544580 NA non-coding upstream 148967 74314342 ~ 74316857 (+)
G544521 dennd5a non-coding upstream 166306 74298879 ~ 74299518 (+)
G544571 NA non-coding upstream 169972 74295358 ~ 74295852 (+)
G544756 LOC105416325 non-coding downstream 1602 74467627 ~ 74467972 (+)
G544757 NA non-coding downstream 2239 74468264 ~ 74468808 (+)
G544758 NA non-coding downstream 3957 74469982 ~ 74470458 (+)
G544761 NA non-coding downstream 14133 74480158 ~ 74480412 (+)
G544766 NA non-coding downstream 26253 74492278 ~ 74492583 (+)
G544565 NA other upstream 177686 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1078137 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1320477 73037953 ~ 73182742 (+)
G542890 NA other upstream 1698973 72765681 ~ 72766851 (+)
saa saa other upstream 1798952 72665460 ~ 72666872 (+)
G545485 NA other downstream 771775 75237800 ~ 75238164 (+)
G545601 NA other downstream 955836 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1462203 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2421407 76827001 ~ 77038395 (+)
G547884 NA other downstream 2811967 77277992 ~ 77279354 (+)

Expression


Co-expression Network