G544756 (LOC105416325)


Basic Information

Item Value
gene id G544756
gene name LOC105416325
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74467627 ~ 74467972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616840
gcagggagccaggtttttcactaagttggaccttcgtaacgcttaccatctcgtgcgcatcagggagggggacgagtggaagacggcgtttaacactccgttagggcactttgaataccgggttcttcctttcggcctcgctaacgctacagctgtctttcaggcattagtcaatgatgtcctgagagacatgctgaacatctttgttttcgtttaccttgacgatatcctgattttttcaccgtcactccagattcatgttcagcacgttcgacgtgtcctccagcgccttttagagaattgtctttttgtgaaggctgagaagtgctcttttcatgcctcctcc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616840 True 346 lncRNA 0.49 1 74467627 74467972

Neighbor

gene id symbol gene type direction distance location
LOC110526569 LOC106562354 coding upstream 3813 74443137 ~ 74463814 (+)
LOC110526568 LOC106587550 coding upstream 36950 74395368 ~ 74430677 (+)
LOC110526567 wee1 coding upstream 72590 74389782 ~ 74395037 (+)
LOC110526565 LOC106562357 coding upstream 89598 74363115 ~ 74378029 (+)
LOC118965110 NA coding upstream 106948 74360536 ~ 74360679 (+)
LOC110526570 cyp1a3 coding downstream 37072 74505044 ~ 74509032 (+)
LOC110526571 LOC106562351 coding downstream 41475 74509447 ~ 74536436 (+)
LOC110526572 LOC106562350 coding downstream 68973 74536945 ~ 74580991 (+)
LOC110515568 LOC106587555 coding downstream 133542 74601514 ~ 74607809 (+)
LOC110526573 LOC106594537 coding downstream 141419 74609391 ~ 74612035 (+)
G544754 NA non-coding upstream 1602 74465824 ~ 74466025 (+)
G544591 NA non-coding upstream 133695 74333602 ~ 74333932 (+)
G544586 NA non-coding upstream 142383 74324910 ~ 74325244 (+)
G544580 NA non-coding upstream 150770 74314342 ~ 74316857 (+)
G544521 dennd5a non-coding upstream 168109 74298879 ~ 74299518 (+)
G544757 NA non-coding downstream 292 74468264 ~ 74468808 (+)
G544758 NA non-coding downstream 2010 74469982 ~ 74470458 (+)
G544761 NA non-coding downstream 12186 74480158 ~ 74480412 (+)
G544766 NA non-coding downstream 24306 74492278 ~ 74492583 (+)
G544739 NA non-coding downstream 28118 74496090 ~ 74499096 (+)
G544565 NA other upstream 179489 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1079940 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1322280 73037953 ~ 73182742 (+)
G542890 NA other upstream 1700776 72765681 ~ 72766851 (+)
saa saa other upstream 1800755 72665460 ~ 72666872 (+)
G545485 NA other downstream 769828 75237800 ~ 75238164 (+)
G545601 NA other downstream 953889 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1460256 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2419460 76827001 ~ 77038395 (+)
G547884 NA other downstream 2810020 77277992 ~ 77279354 (+)

Expression


Co-expression Network