Gene
RNA
| Item | Value |
|---|---|
| gene id | G544830 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 74615131 ~ 74615703 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| TC1-like transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU616926 | True | 573 | lncRNA | 0.52 | 1 | 74615131 | 74615703 |
74,612,800
74,613,200
74,613,600
74,614,000
74,614,400
74,614,800
74,615,200
74,615,600
74,616,000
74,616,400
74,616,800
74,617,200
74,617,600
NC_048570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110526573 | LOC106594537 | coding | upstream | 3096 | 74609391 ~ 74612035 (+) |
| LOC110515568 | LOC106587555 | coding | upstream | 7322 | 74601514 ~ 74607809 (+) |
| LOC110526572 | LOC106562350 | coding | upstream | 34140 | 74536945 ~ 74580991 (+) |
| LOC110526571 | LOC106562351 | coding | upstream | 78695 | 74509447 ~ 74536436 (+) |
| LOC110526570 | cyp1a3 | coding | upstream | 106099 | 74505044 ~ 74509032 (+) |
| LOC110526575 | LOC106587557 | coding | downstream | 15316 | 74631019 ~ 74656748 (+) |
| LOC110526576 | tm2d3 | coding | downstream | 41185 | 74656888 ~ 74663789 (+) |
| LOC110526577 | LOC106587561 | coding | downstream | 56481 | 74672184 ~ 74732529 (+) |
| LOC110526579 | LOC106562344 | coding | downstream | 161576 | 74777279 ~ 74795369 (+) |
| LOC118965044 | LOC106609580 | coding | downstream | 287237 | 74902940 ~ 74903683 (+) |
| G544829 | NA | non-coding | upstream | 211 | 74614534 ~ 74614920 (+) |
| G544828 | NA | non-coding | upstream | 2553 | 74612091 ~ 74612578 (+) |
| G544817 | NA | non-coding | upstream | 20067 | 74594794 ~ 74595064 (+) |
| G544739 | NA | non-coding | upstream | 116035 | 74496090 ~ 74499096 (+) |
| G544766 | NA | non-coding | upstream | 122548 | 74492278 ~ 74492583 (+) |
| G544831 | NA | non-coding | downstream | 119 | 74615822 ~ 74616032 (+) |
| G544832 | NA | non-coding | downstream | 358 | 74616061 ~ 74616267 (+) |
| G544805 | NA | non-coding | downstream | 774 | 74616477 ~ 74639188 (+) |
| G544865 | NA | non-coding | downstream | 88554 | 74704257 ~ 74724211 (+) |
| G544565 | NA | other | upstream | 326993 | 74287778 ~ 74288138 (+) |
| LOC100136290 | sox6 | other | upstream | 1227444 | 73190979 ~ 73392251 (+) |
| LOC110526543 | LOC106587517 | other | upstream | 1469784 | 73037953 ~ 73182742 (+) |
| G542890 | NA | other | upstream | 1848280 | 72765681 ~ 72766851 (+) |
| saa | saa | other | upstream | 1948259 | 72665460 ~ 72666872 (+) |
| G545485 | NA | other | downstream | 622097 | 75237800 ~ 75238164 (+) |
| G545601 | NA | other | downstream | 806158 | 75421861 ~ 75422752 (+) |
| G546464 | LOC106562315 | other | downstream | 1312525 | 75928228 ~ 75970674 (+) |
| LOC110526968 | fto | other | downstream | 2271729 | 76827001 ~ 77038395 (+) |
| G547884 | NA | other | downstream | 2662289 | 77277992 ~ 77279354 (+) |
