G544805


Basic Information

Item Value
gene id G544805
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74616477 ~ 74639188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616894
AGCCATTTTAATTAAATTGAATCAGCCTTTTAAGGTAATAAATAATTTATAAAATCATACCCATACAAAATATTTCAACAAAAACAATACACAATTGTCAGTTCTCAATTCGACACACATTTCTTCCTTTTCAGTTACACCATTCAATTTCCTGATTAGACAGCAGATAGCCTCCTATGATACAGCATATTCACAAATAATAAAAGTTCCCTTGAAAGTAGATTCATGCACACAACCTTGCTCACTGAAAACAAACAGAAAGGAAAAGACCCACAACAGTAATAACGGTTAACCTGTCACCAAATGTCCAACATTTTGGCAGGCTACTAAAGCAGGCTGAGTTGTGACGCACGCCTTGACTTGACAGTTGCTACTGTATGCCTTCATCCTGACCGGTGCCAACCCAAAAGTAAATGAAAGTCTACAGAGTAAATAAGGCTGCAAGCCGCACCTCTCCAGCAGAGGGAGCGTGGTGAGGCTGTGGTCAGGCCACAGAAAAGGGAtttcgtttgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtggggcgacAGAAGGGCTTTCCCAAATATTCATGATACATTTCGATAACTCCCTTCAGTTACAGACGACAAACCATTCTGAGTCGCCATCTCTTTTGCAACTACAAGCATTTGAGGCTCATTATTACCCTTATTCATCCTGcaacataacacaacaacatgatacaGCACTAGTTTATCACGACAGTACAGTATTAGCATACAAGCTGTCCAGCCTTTCCATATGAATGGTTAGGCAGGAGGGCTTTGAGGCTGAGCAGTGACTCGAGACTGTGACAGTcttctgtgttgtgttggtgaGGGGGATGCAAGGCTGACAAGCTGCTAGTTGAAGTCCAGGCAGAGTAATAACAGGGTAGATTGTCTCTGACGCCATAGCCTCCTTTTCCAGGCTTTCTCACTTTTGTTGGGAAACAACAGCCGTGCGATGATTGAGACTTACAAGTAGGGTGACTCGAGACTACTGAGGCCATGGTCTCAGAGGCCTGAGGGATTCCTTAGCCTGACCCGTAGAGGTGCAGGGGTCTGGGGCTCCGCAGGCACGATGGACCCTCTCTCTGGTTCCTACTGCCAGGCTGGCTCA
>TU616895
AAAATATTTCAACAAAAACAATACACAATTGTCAGTTCTCAATTCGACACACATTTCTTCCTTTTCAGTTACACCATTCAATTTCCTGATTAGACAGCAGATAGCCTCCTATGATACAGCATATTCACAAATAATAAAAGTTCCCTTGAAAGTAGATTCATGCACACAACCTTGCTCACTGAAAACAAACAGAAAGGAAAAGACCCACAACAGTAATAACGGTTAACCTGTCACCAAATTGTCTCTTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616894 False 1132 lncRNA 0.45 2 74616477 74617643
TU616895 True 250 lncRNA 0.34 2 74616543 74639188

Neighbor

gene id symbol gene type direction distance location
LOC110526573 LOC106594537 coding upstream 4442 74609391 ~ 74612035 (+)
LOC110515568 LOC106587555 coding upstream 8668 74601514 ~ 74607809 (+)
LOC110526572 LOC106562350 coding upstream 35486 74536945 ~ 74580991 (+)
LOC110526571 LOC106562351 coding upstream 80041 74509447 ~ 74536436 (+)
LOC110526570 cyp1a3 coding upstream 107445 74505044 ~ 74509032 (+)
LOC110526576 tm2d3 coding downstream 17700 74656888 ~ 74663789 (+)
LOC110526577 LOC106587561 coding downstream 32996 74672184 ~ 74732529 (+)
LOC110526579 LOC106562344 coding downstream 138091 74777279 ~ 74795369 (+)
LOC118965044 LOC106609580 coding downstream 263752 74902940 ~ 74903683 (+)
LOC110526582 LOC106562373 coding downstream 283208 74922396 ~ 75155528 (+)
G544832 NA non-coding upstream 210 74616061 ~ 74616267 (+)
G544831 NA non-coding upstream 445 74615822 ~ 74616032 (+)
G544830 NA non-coding upstream 774 74615131 ~ 74615703 (+)
G544829 NA non-coding upstream 1557 74614534 ~ 74614920 (+)
G544828 NA non-coding upstream 3899 74612091 ~ 74612578 (+)
G544865 NA non-coding downstream 65069 74704257 ~ 74724211 (+)
G545117 NA non-coding downstream 98877 74738065 ~ 74738310 (+)
G545363 NA non-coding downstream 353424 74992612 ~ 74993103 (+)
G545457 NA non-coding downstream 550531 75189719 ~ 75190182 (+)
G544565 NA other upstream 328339 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1228790 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1471130 73037953 ~ 73182742 (+)
G542890 NA other upstream 1849626 72765681 ~ 72766851 (+)
saa saa other upstream 1949605 72665460 ~ 72666872 (+)
G545485 NA other downstream 598612 75237800 ~ 75238164 (+)
G545601 NA other downstream 782673 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1289040 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2248244 76827001 ~ 77038395 (+)
G547884 NA other downstream 2638804 77277992 ~ 77279354 (+)

Expression


Co-expression Network