G544865


Basic Information

Item Value
gene id G544865
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74704257 ~ 74724211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616975
cagtgggtcagaagtgtacatacactaaacagcttggaaaattccagaaaaggatgtcatgatTTTAGAAGCTTCAgtttggctaattgacatcatttgagtcaattggaggtgcccatgtggatgtatttcaaagctaccttaaaactcagtgcctctttgcttgacatcatgggaaaatcaaaataaatcagccaagacctcagaaaacaattgtagacctccacaagtctggttcatccttgggagcaatttacaaatgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616975 True 330 lncRNA 0.41 2 74704257 74724211

Neighbor

gene id symbol gene type direction distance location
LOC110526576 tm2d3 coding upstream 40468 74656888 ~ 74663789 (+)
LOC110526575 LOC106587557 coding upstream 47509 74631019 ~ 74656748 (+)
LOC110526573 LOC106594537 coding upstream 92222 74609391 ~ 74612035 (+)
LOC110515568 LOC106587555 coding upstream 96448 74601514 ~ 74607809 (+)
LOC110526572 LOC106562350 coding upstream 123266 74536945 ~ 74580991 (+)
LOC110526579 LOC106562344 coding downstream 53068 74777279 ~ 74795369 (+)
LOC118965044 LOC106609580 coding downstream 178729 74902940 ~ 74903683 (+)
LOC110526582 LOC106562373 coding downstream 198185 74922396 ~ 75155528 (+)
LOC110526583 LOC106562374 coding downstream 444357 75168568 ~ 75194690 (+)
LOC110526584 LOC106587566 coding downstream 592294 75316505 ~ 75324636 (+)
LOC110526577 LOC106587561 non-coding upstream 28789 74672184 ~ 74732529 (+)
G544805 NA non-coding upstream 65069 74616477 ~ 74639188 (+)
G544832 NA non-coding upstream 87990 74616061 ~ 74616267 (+)
G544831 NA non-coding upstream 88225 74615822 ~ 74616032 (+)
G544830 NA non-coding upstream 88554 74615131 ~ 74615703 (+)
G545117 NA non-coding downstream 13854 74738065 ~ 74738310 (+)
G545363 NA non-coding downstream 268401 74992612 ~ 74993103 (+)
G545457 NA non-coding downstream 465508 75189719 ~ 75190182 (+)
G545460 NA non-coding downstream 474095 75198306 ~ 75198529 (+)
G545462 NA non-coding downstream 475500 75199711 ~ 75204903 (+)
G544565 NA other upstream 416119 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1316570 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1558910 73037953 ~ 73182742 (+)
G542890 NA other upstream 1937406 72765681 ~ 72766851 (+)
saa saa other upstream 2037385 72665460 ~ 72666872 (+)
G545485 NA other downstream 513589 75237800 ~ 75238164 (+)
G545601 NA other downstream 697650 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1204017 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2163221 76827001 ~ 77038395 (+)
G547884 NA other downstream 2553781 77277992 ~ 77279354 (+)

Expression


Co-expression Network