G545457


Basic Information

Item Value
gene id G545457
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75189719 ~ 75190182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU617629
GTGATGAAGTGGACAATGAAGATGAGGTAGAAACAACGTTTTAGTGGCCATGTATAGTTAAACAAAGTAGGATTCCCTCCGTGCAGCACCACATTACTCTGAGTCTGCTCTACCTGTCACTCACACCCAGTCCTACGTCCTGACAACTGGAGACTGAGACCCCCAGTCCTACGTCCTGACAACTGGAGACTTAGACCCCCAGTCCTACATCC

Function

NR:

description
PREDICTED: putative protein FAM47C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU617629 True 212 lncRNA 0.50 2 75189719 75190182

Neighbor

gene id symbol gene type direction distance location
LOC110526582 LOC106562373 coding upstream 34191 74922396 ~ 75155528 (+)
LOC118965044 LOC106609580 coding upstream 286036 74902940 ~ 74903683 (+)
LOC110526579 LOC106562344 coding upstream 394350 74777279 ~ 74795369 (+)
LOC110526577 LOC106587561 coding upstream 457190 74672184 ~ 74732529 (+)
LOC110526576 tm2d3 coding upstream 525930 74656888 ~ 74663789 (+)
LOC110526584 LOC106587566 coding downstream 126323 75316505 ~ 75324636 (+)
LOC110526588 LOC106562377 coding downstream 203615 75393797 ~ 75408675 (+)
LOC110526592 LOC106587573 coding downstream 264805 75454987 ~ 75456513 (+)
LOC110526593 cnep1r1 coding downstream 266420 75456602 ~ 75459378 (+)
heatr3 LOC106587571 coding downstream 269477 75459659 ~ 75468641 (+)
G545363 NA non-coding upstream 196616 74992612 ~ 74993103 (+)
G545117 NA non-coding upstream 451409 74738065 ~ 74738310 (+)
G544865 NA non-coding upstream 465508 74704257 ~ 74724211 (+)
G544805 NA non-coding upstream 550531 74616477 ~ 74639188 (+)
G545460 NA non-coding downstream 8124 75198306 ~ 75198529 (+)
G545462 NA non-coding downstream 9529 75199711 ~ 75204903 (+)
G545464 NA non-coding downstream 16101 75206283 ~ 75206642 (+)
G545470 NA non-coding downstream 27156 75217338 ~ 75217617 (+)
G545478 NA non-coding downstream 38506 75228688 ~ 75228927 (+)
G544565 NA other upstream 901581 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1802032 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2044372 73037953 ~ 73182742 (+)
G542890 NA other upstream 2422868 72765681 ~ 72766851 (+)
saa saa other upstream 2522847 72665460 ~ 72666872 (+)
G545485 NA other downstream 47618 75237800 ~ 75238164 (+)
G545601 NA other downstream 231679 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 738046 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1697250 76827001 ~ 77038395 (+)
G547884 NA other downstream 2087810 77277992 ~ 77279354 (+)

Expression


Co-expression Network