G545462


Basic Information

Item Value
gene id G545462
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75199711 ~ 75204903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU617635
TTTACAAAATAGGTACAAATACATAAGTATGTTTTTCACACAAACAGGACATTTTCAGGATATGTACAGAGTTTACCAAAAATAACATAGTCCTAATAAACACATGGTCCTGTAAACAATATTTACAAATTATCCATACATTAAAACATCTTCCAACTGGGTACATCAGTAATCCTTATATTTTGGCTAAAAAGCTGAAGTAGTAGAAATGTTCTCCTGTTAATTTATCAGAAATCATACAAATAATTATTAAAATATTAATAACCACTGAACAAATAGATATTTTTGTGCTTTTAAACTTCAATTTTTTCAACTATAAGTACTTGTGAGATAAAATTGCAttgcctaaaatgtggcaaatgaAA
>TU617637
ACAGGAACTATTTCTTTCTATACATTAGTAACACAGcgttctgttttttttctcattgtATAAGTAATAAAAAAAACTGTATATAATAGTGCTGTTAGAAATAACTTCAATGAACATTCATTTCAAATGTTGCCCATTCAACAAATAAATGACAAAGCGACACAAGACAAGCTGCATAGAGGCTAGGCTATTCAAAACCAACCAATAAGAGAAAGGCCATGTTAATAAGAGGATGGTCAGAAACAGGTGACAACACTGAGGCCTTGCAGAGTTGGACCCTAATGACAAGGATCTATAGCTACTGACAGAGAGGCAGTCGCCTCCCACCTCTCGTTCTAGAGAGAACATAAAAACATACAACTCTAAAAACATTGCAATGTCAATATTAGGCTTAGGAAGAATTCtcaaaactgtacttcaacaaCTGTCCAGCTGCTCACACGTCTGATATGTGTTGTTAATAGTCTTGAAGTGAAACAGAGGAAACCCTACGATGGGAGCTGCTTGTCGAACGACCATACTGCACTCTGGGCGTCTGCTGAGGGTATGGACCTGGCTTCACAGAATAAGTTCTTCAGACAACCTAAAGTATTGTGGAAATGGGCACACACAATGAGACAGATGGCCAACATCTAAATTCTACTGGGACatctagaaaaaaaaaatctctccaTAAATTTGGGTACAGAGAGAGACTACTGTGCCTTGCCCAATGAGGGTGACTGGCCAGAATCCACCATATTGGTGGACTGTGGTAACTCTGACCATTGTTAGATTATTGACCTGTTGGATTGGATAAGACTATCTGCATTGTATTGAAATAAAGTTTATAAAGTGAAAGAATACAAAGAATACAATTTGCTTATTGACAGTTAAATGTTACCTTTCAGGTATTTTacatttgttcatgtttttttaagtgtactgtatgtaaatgataaagtatttttgtctgtaatgtctttttcgttTTATGTCGGAccccaggtagactagctgtcgTCATGgtgtcagctaatggggatcccaaaAAAATAACATTCTAATCATAACAAATTTCAATGCACATGATTTTACAGAATATCTCAGTATTGAGTCATTAACATTACATGTGGTAAGAATATCATACATGCTGTTCAAAAGTATTCAAAATGACTATTTACATTTAAAGAGCTCAATTTCTGTTCTGCTGTAATCCATTTTCTGAAGATAAACTTTCCAAAAAGCTGCTCGGATAAGTTTCTGGTATAAAGAATCAGACCACTCTATGACTTGTTAGTTTTGTGTGACCATATTCACTGAACTTTCTTCAACAAATACATTCTAGAGAATATTGTAGACTGTATTAAGTTCAGAATAGAATTCTTTTAAAGAAAATCACTTTGAGATGGTTCATTGAGTATTTCGTCTGGGACATCAAATTTACAACTGACATGGAAAAAGTACTGGCTCAGGTCCTTAGACACAAAAACCCCATTTCTCCTTAAAAACCCAGTCCCAATAATACCCAAGGAGTTTGCATCACCATGGCCTTAAATTCAACACTCTAAATACataaacactgagtgtacaaaacattaaggacacctgctctttccatgacatagactgaccaggagaatgaaggtgaaagctatgatcccttattgatgtcacctgttaaatccacttgaatcagtttagatgaaggggaggagacaggttaaagaaggatttctgagacatggattgcatacgtgtgccattcagagggtgaatgatcaagacaaaatatttaagtgcctttgaatggggtatggcagtaggtgccagacgcaccgttttgtgtcaagaactgcaacactgctgggtttttcacgctcaacagtttcccgtgtgtatcaagaatggtccaccacccaaaggacatccagctaacttgacaactgtgggaggcattggagtcaacatgggctagcatccctgtcgaacactttcgacaccttgtagagtcaatgcccctacgaactgaggctgttctgggggcaaaaggCAAAAGggaaatattaggaaggtgttcttaatgtttggtactcAGTGTATTTATCATGAAGCTAAAACAGATAAAGACACATACAATATATTTTGGTGAGTTTTTTCTCTCGCCTTTATATCAAAAGGTACGTTAATATCAACATCACAACAGACACTGAGCTGAAACATCTGACCCGATTGAAGGCACATTGCAGGGGTAGAAGGAGATggtaaggaagagagaggagggtgctgggagggagagggtgtTACTTGAGCAGAGCCCGGTAGAGCAGAAGTGAgtgggctgtctctctctcctgctccatgTAGAAGATGAAGTCCCTGAGATTGACGCGGGTGATGCGTTGACGTTGCCGCTGTGATGacgtggagggggaggaggcggCGCCCGGCGACCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU617635 False 365 lncRNA 0.27 1 75199711 75200075
TU617637 True 2435 lncRNA 0.40 1 75202469 75204903

Neighbor

gene id symbol gene type direction distance location
LOC110526583 LOC106562374 coding upstream 5021 75168568 ~ 75194690 (+)
LOC110526582 LOC106562373 coding upstream 44183 74922396 ~ 75155528 (+)
LOC118965044 LOC106609580 coding upstream 296028 74902940 ~ 74903683 (+)
LOC110526579 LOC106562344 coding upstream 404342 74777279 ~ 74795369 (+)
LOC110526577 LOC106587561 coding upstream 467182 74672184 ~ 74732529 (+)
LOC110526584 LOC106587566 coding downstream 111602 75316505 ~ 75324636 (+)
LOC110526588 LOC106562377 coding downstream 188894 75393797 ~ 75408675 (+)
LOC110526592 LOC106587573 coding downstream 250084 75454987 ~ 75456513 (+)
LOC110526593 cnep1r1 coding downstream 251699 75456602 ~ 75459378 (+)
heatr3 LOC106587571 coding downstream 254756 75459659 ~ 75468641 (+)
G545460 NA non-coding upstream 1182 75198306 ~ 75198529 (+)
G545457 NA non-coding upstream 9529 75189719 ~ 75190182 (+)
G545363 NA non-coding upstream 206608 74992612 ~ 74993103 (+)
G545117 NA non-coding upstream 461401 74738065 ~ 74738310 (+)
G544865 NA non-coding upstream 475500 74704257 ~ 74724211 (+)
G545464 NA non-coding downstream 1380 75206283 ~ 75206642 (+)
G545470 NA non-coding downstream 12435 75217338 ~ 75217617 (+)
G545478 NA non-coding downstream 23785 75228688 ~ 75228927 (+)
G545479 NA non-coding downstream 25163 75230066 ~ 75230364 (+)
G545481 NA non-coding downstream 26953 75231856 ~ 75232202 (+)
G544565 NA other upstream 911573 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1812024 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2054364 73037953 ~ 73182742 (+)
G542890 NA other upstream 2432860 72765681 ~ 72766851 (+)
saa saa other upstream 2532839 72665460 ~ 72666872 (+)
G545485 NA other downstream 32897 75237800 ~ 75238164 (+)
G545601 NA other downstream 216958 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 723325 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1682529 76827001 ~ 77038395 (+)
G547884 NA other downstream 2073089 77277992 ~ 77279354 (+)

Expression


Co-expression Network