G545479



Basic Information


Item Value
gene id G545479
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75230066 ~ 75230364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU617656
CGTGTCTACAATATGCTCgccgcacacaaacacacacacacacacatgcacacagcgtCATATCTTTAACACCATGATTCATCACTATTTAACTCTTTCTGATCTTGGAATCTGTTTGCCCTATTTCCATTCATGTGGGAATTAAAAACATTGATTTTAAACTGTGTTGACAGTTTTATAAAGAACCTAACCAGCCATGCATGATGATGGCCATCTCATCAATTCATATGTTCTGCATTCCATACATATTCAAAGAGCATGACACAAATACATCGGGAAAAatggaaacatttaaatat

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU617656 True 299 lncRNA 0.36 1 75230066 75230364

Neighbor


gene id symbol gene type direction distance location
LOC110526583 LOC106562374 coding upstream 35376 75168568 ~ 75194690 (+)
LOC110526582 LOC106562373 coding upstream 74538 74922396 ~ 75155528 (+)
LOC118965044 LOC106609580 coding upstream 326383 74902940 ~ 74903683 (+)
LOC110526579 LOC106562344 coding upstream 434697 74777279 ~ 74795369 (+)
LOC110526577 LOC106587561 coding upstream 497537 74672184 ~ 74732529 (+)
LOC110526584 LOC106587566 coding downstream 86141 75316505 ~ 75324636 (+)
LOC110526588 LOC106562377 coding downstream 163433 75393797 ~ 75408675 (+)
LOC110526592 LOC106587573 coding downstream 224623 75454987 ~ 75456513 (+)
LOC110526593 cnep1r1 coding downstream 226238 75456602 ~ 75459378 (+)
heatr3 LOC106587571 coding downstream 229295 75459659 ~ 75468641 (+)
G545478 NA non-coding upstream 1139 75228688 ~ 75228927 (+)
G545470 NA non-coding upstream 12449 75217338 ~ 75217617 (+)
G545464 NA non-coding upstream 23424 75206283 ~ 75206642 (+)
G545462 NA non-coding upstream 25163 75199711 ~ 75204903 (+)
G545460 NA non-coding upstream 31537 75198306 ~ 75198529 (+)
G545481 NA non-coding downstream 1492 75231856 ~ 75232202 (+)
G545494 NA non-coding downstream 15452 75245816 ~ 75246243 (+)
G545504 NA non-coding downstream 25010 75255374 ~ 75255580 (+)
G545506 NA non-coding downstream 26638 75257002 ~ 75257228 (+)
G545492 NA non-coding downstream 104646 75335010 ~ 75337018 (+)
G544565 NA other upstream 941928 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1842379 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2084719 73037953 ~ 73182742 (+)
G542890 NA other upstream 2463215 72765681 ~ 72766851 (+)
saa saa other upstream 2563194 72665460 ~ 72666872 (+)
G545485 NA other downstream 7436 75237800 ~ 75238164 (+)
G545601 NA other downstream 191497 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 697864 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1657068 76827001 ~ 77038395 (+)
G547884 NA other downstream 2047628 77277992 ~ 77279354 (+)

Expression



Co-expression Network