G545506



Basic Information


Item Value
gene id G545506
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75257002 ~ 75257228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU617686
GTACTAGCCTACTGTAGCTATCAGCGACGCAGTGTACTTTTCCTATGAGTCTATGAAAGAAAGATTGATACACTGTTGAATGTTCCCGTAGTTTTATTGTACAACGTTTCGACCCGTAGGTCTTCGTCTATGCTATGGTAATACAGGCAGCTAACAGTGCTGCCCCCTGCCATAGCAATGGGAATAATTCTATAAAAAATTCCTGTTTAACTAGCATAAATTCATTT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU617686 True 227 lncRNA 0.40 1 75257002 75257228

Neighbor


gene id symbol gene type direction distance location
LOC110526583 LOC106562374 coding upstream 62312 75168568 ~ 75194690 (+)
LOC110526582 LOC106562373 coding upstream 101474 74922396 ~ 75155528 (+)
LOC118965044 LOC106609580 coding upstream 353319 74902940 ~ 74903683 (+)
LOC110526579 LOC106562344 coding upstream 461633 74777279 ~ 74795369 (+)
LOC110526577 LOC106587561 coding upstream 524473 74672184 ~ 74732529 (+)
LOC110526584 LOC106587566 coding downstream 59277 75316505 ~ 75324636 (+)
LOC110526588 LOC106562377 coding downstream 136569 75393797 ~ 75408675 (+)
LOC110526592 LOC106587573 coding downstream 197759 75454987 ~ 75456513 (+)
LOC110526593 cnep1r1 coding downstream 199374 75456602 ~ 75459378 (+)
heatr3 LOC106587571 coding downstream 202431 75459659 ~ 75468641 (+)
G545504 NA non-coding upstream 1422 75255374 ~ 75255580 (+)
G545494 NA non-coding upstream 10759 75245816 ~ 75246243 (+)
G545481 NA non-coding upstream 24800 75231856 ~ 75232202 (+)
G545479 NA non-coding upstream 26638 75230066 ~ 75230364 (+)
G545478 NA non-coding upstream 28075 75228688 ~ 75228927 (+)
G545492 NA non-coding downstream 77782 75335010 ~ 75337018 (+)
G545600 NA non-coding downstream 161821 75419049 ~ 75490051 (+)
G545618 NA non-coding downstream 186462 75443690 ~ 75444352 (+)
tent4b LOC106587575 non-coding downstream 230777 75474043 ~ 75498286 (+)
G545684 NA non-coding downstream 339937 75597165 ~ 75597427 (+)
G545485 NA other upstream 18838 75237800 ~ 75238164 (+)
G544565 NA other upstream 968864 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1869315 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2111655 73037953 ~ 73182742 (+)
G542890 NA other upstream 2490151 72765681 ~ 72766851 (+)
G545601 NA other downstream 164633 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 671000 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1630204 76827001 ~ 77038395 (+)
G547884 NA other downstream 2020764 77277992 ~ 77279354 (+)
G548000 NA other downstream 2255381 77512609 ~ 77523423 (+)

Expression



Co-expression Network