G545492


Basic Information

Item Value
gene id G545492
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75335010 ~ 75337018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU617672
aggtaacaagtacactgtaaacaccaatgcaatgtagaaacataaaaaatgtattaggccaaacattactgttgtatacagtagcatacaacaaatccataaacatatgtaaaccaaaagtatattctttagaatacagtaaagaacacaatttgtgtgtgtggggtcccggggggtcagtccaggaattggtaggggggggaatcttcgtccacatcacaggatacgttttctcttgccaaacatcgagggaagtatctcctagcatggcgtatccaaccttggacagaggcaacctctatccAACCTCAACCtcgccactgtaaatcgactcaagttggggtggactctcagtccagcctctctcatggtcaaaccgtggttgatcacatgatcaacaagttttgccctaatctcatcagagatggctctccttccttctcttctttgccttcgtcctcttcctctccctcctactcctcttgctctctgtccattgttggcatccattgttaAAAACAGgtcatctgacctttgacctatttataggcctatactacagtaaagcagtgattggttagtgatcagttaagctattagtgtttgcacatgtgaggagtgtgtgtgtgacctggtgaataagtgtagcattttgattggttgtgtttggaaaaggaaagcaagtcacttcctgttaaatttttgtgttttaggtagataattgtgtgtagtgttttgaaaaaagtgttatgcaattgacaactgagtcaaacgctgagaaatagcttatggttttggatatttggtgtgtagttttgcactttgagtgagaggtttcaaaaatcgtgtgacatgaaaagattttgtgtgtaagcagttggaaaaaactgtaaagcAGCAGAGAAGACCTGATTCATCAAGTATCAATTCATTCTGGTGATTCTCACCTGGTTGGCATGCACAACATAAGACACTTCAATCTGACACTTGTTAACGTCAGGCAAAACGTCTTCAGCCATCGTAGGACGGCGAGCCGCTGGTTGGCATTTGACTGCAGTGTCTGTACCGGGAAAGGAAGTTATAAGAAATGGCCCCATGATATCGAAGCTTCTTACCATTTCCATTGCAGCCCATTCAATATCGATTTTAAAAACCTGGAACAATAGATTGTGTAGCACAATGTACAACTCCAGTTTGCCTATTGTCACAACAAATGTCAATTATACATTTTTTGATACGTCAGAGTGCATTTTATTTTATAGCTCTGCTTTCAACGACATCCTGACCCACAAACTGGTTAGCAGACTCAGGGTTCTGGGTGTAAATCCTGTAATAATatacaataataatacaatattatCATAAAAATGTGTATCCCCAGAATGGACCCGACACTACCATGGTACACATGAGTACATGAAGGAGCTGTGGGACCTGACATAATGGTGATACGTCAGTCTCAGCGTAAGCAAAACAAAGTAGATGGTGATACTTGACCATTCTCCCATCTACTGTACATTGACATGGAGATGATCAGCAGCTTCAAGTTCCTGGGCACCCTGAGATCCTTTTCTGCCCTCAGTTACTTCACTCAAAGTCCCACTTGTGCTTCTCCACTAAACTTTCTGCACCACGACCTATGTACCAACTACAGTGTCTTTTGCCATTACACATGTAAATGAAATGTCCATATTTACTGGAAGATGTATTTATGGTAGCATAGTCCCTTGACATACATGACTTAACTACTTTGCATAATGCTCAGTTTACCCACTAAGAAATCATAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC109202034

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU617672 True 1787 lncRNA 0.41 2 75335010 75337018

Neighbor

gene id symbol gene type direction distance location
LOC110526584 LOC106587566 coding upstream 10374 75316505 ~ 75324636 (+)
LOC110526583 LOC106562374 coding upstream 140320 75168568 ~ 75194690 (+)
LOC110526582 LOC106562373 coding upstream 179482 74922396 ~ 75155528 (+)
LOC118965044 LOC106609580 coding upstream 431327 74902940 ~ 74903683 (+)
LOC110526579 LOC106562344 coding upstream 539641 74777279 ~ 74795369 (+)
LOC110526588 LOC106562377 coding downstream 56779 75393797 ~ 75408675 (+)
LOC110526592 LOC106587573 coding downstream 117969 75454987 ~ 75456513 (+)
LOC110526593 cnep1r1 coding downstream 119584 75456602 ~ 75459378 (+)
heatr3 LOC106587571 coding downstream 122641 75459659 ~ 75468641 (+)
tent4b LOC106587575 coding downstream 137025 75474043 ~ 75498286 (+)
G545506 NA non-coding upstream 77782 75257002 ~ 75257228 (+)
G545504 NA non-coding upstream 79430 75255374 ~ 75255580 (+)
G545494 NA non-coding upstream 88767 75245816 ~ 75246243 (+)
G545481 NA non-coding upstream 102808 75231856 ~ 75232202 (+)
G545479 NA non-coding upstream 104646 75230066 ~ 75230364 (+)
G545600 NA non-coding downstream 82031 75419049 ~ 75490051 (+)
G545618 NA non-coding downstream 106672 75443690 ~ 75444352 (+)
G545684 NA non-coding downstream 260147 75597165 ~ 75597427 (+)
G545725 NA non-coding downstream 321277 75658295 ~ 75658516 (+)
G545485 NA other upstream 96846 75237800 ~ 75238164 (+)
G544565 NA other upstream 1046872 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1947323 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2189663 73037953 ~ 73182742 (+)
G542890 NA other upstream 2568159 72765681 ~ 72766851 (+)
G545601 NA other downstream 84843 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 591210 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1550414 76827001 ~ 77038395 (+)
G547884 NA other downstream 1940974 77277992 ~ 77279354 (+)
G548000 NA other downstream 2175591 77512609 ~ 77523423 (+)

Expression


Co-expression Network