G545600


Basic Information

Item Value
gene id G545600
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75419049 ~ 75490051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU617794
GTCCCGATTTTTAATACATTAAATAACTTTAGACTTTTTCATGTTTAGATAAATAAATCTAGTTTCCTTTTTTATGAACCATCTAGGTAATCAAACACTTATACAAAAGCGATACAAAAGTGATGTGACAGAGGTGTCATATGTGCTTATTGAAAACTACtgataggagagagaggtctTCACTTTCAGAGTGATTTATGAGGATGAAAGAAAAACTAGCCTCTATGCACAGGTCTGGGGAAACTAGCTGTGTGCTATGCAATAGAAATGGAACTGAAGTAGTATTTTTTAAAAGAGGTGTATTAAGACAACATTAAAGGGGATCAACTCTTGTCAAGTCTAAACATTTTCTGCTTTAATGAAAAATGATTTGAGATTGATGAGTGGGTCTTATTGTACTATTCAAACTACAGTTCAGAAAATGCCATTGCCTCATTCTTCAAGTGTATTACACATTCCTTGACTAGGAGTCACATCATACTATGCTGAGATTCAGTTTATCTACCATCAAAGGGAATTTCCCAGCAAAAACATGTACTCCAGGGATACTAGCCTTTTCACTTCTGTAAATGTACAACTGGGAGCAGAGCAAAAATTAAACAACAGTTTGCCAAACATACACTAATAATTACATTCCAAAGAATCTCATCGAGGGATACATCAGAAAGCACATGATGCCTGTGTCGGCCACGCCTCTCCGTAATCTCTACGTCAGCCTCCTTGTCTGTTAGATTCAGTAGTATGAGAGGACAGTTCCTCTGACTAGGCTACTGTGAGCAGGTACTGGGTAGGCCTGAGTCAGAGCCTTAACCCATCCTTTCTgttggagagagattgagagagcatGGGTCGTTTTGTGGAGCTGGATGGCCGTTGTCCTGCTCACTCAACAAGGTACATGCACCATGGCACTGCcactggtgcacacacacacacacacacacacacacacacactgagtataccaaacattaagaacaccttcctaatattgagttacaccacgtttgcactcagaacagcctcaattcatcggacatggactctacaaggtgtcgaaggtgttccatagggatgctggcccatgttgactccaatagtTCCCAcggttgtgtgaagttggctggatgtcctttggctggtggaccattcttgatacacacgggaaaaacccagcaccgttacagtctttgacacaaaccggtgcgcctgacacctacaccataacccgttcaaaggcacttcaatatttagtcttgcccattcaccctctgaatgacacacatacacaatacatgtctcaattgtctcaaggcttaaaaatcaggTTGAACCTGTCTTcaactacactgattgaagtggatttaacaagtgacatcacctggattcatctggtcagtctatgccatggaaagagcagttctTAATGTTTAGTACACTCAGTGTCTATAGACcaacagactaacacacacacacacacacagatgcacacaacGGCACAACCAGCGAGGGAAAACACGGGGGATGGATTCCCCAGAGACATGGGTTGGACCAGCAACTCCCACAACCAACCAGACAATCAGATCAACCAGTAGGTATGACACTGTTACGTGTGCATGAGGAGGATATGTGGGGACTCTCGATGGTCAGACACTCACTTACTCAGTGCTGCCATATGGGTCAAATAACCAGTGTGTGGAACTGTACATGTTAACAGGTCTGTGGATCGCATGACCAAGCAGAGTGACAACACAGAGGCCTCTAGGACATGTGTCCTTGAGGAGAAATTAAACAACGGACCAATACCCTTCAGAGGACCGTTAAGACTGTGACAACTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU617794 True 1838 lncRNA 0.43 2 75419049 75490051

Neighbor

gene id symbol gene type direction distance location
LOC110526588 LOC106562377 coding upstream 10374 75393797 ~ 75408675 (+)
LOC110526584 LOC106587566 coding upstream 94413 75316505 ~ 75324636 (+)
LOC110526583 LOC106562374 coding upstream 224359 75168568 ~ 75194690 (+)
LOC110526582 LOC106562373 coding upstream 263521 74922396 ~ 75155528 (+)
LOC118965044 LOC106609580 coding upstream 515366 74902940 ~ 74903683 (+)
LOC110526596 LOC106587576 coding downstream 8645 75498696 ~ 75572903 (+)
LOC110526967 LOC106587577 coding downstream 174318 75664369 ~ 75702602 (+)
nod2 nod2 coding downstream 262886 75752937 ~ 75765291 (+)
cylda LOC100380700 coding downstream 289365 75779416 ~ 75815231 (+)
LOC118964933 chd9 coding downstream 1114639 76604690 ~ 76620121 (+)
G545492 NA non-coding upstream 82031 75335010 ~ 75337018 (+)
G545506 NA non-coding upstream 161821 75257002 ~ 75257228 (+)
G545504 NA non-coding upstream 163469 75255374 ~ 75255580 (+)
G545494 NA non-coding upstream 172806 75245816 ~ 75246243 (+)
G545481 NA non-coding upstream 186847 75231856 ~ 75232202 (+)
G545684 NA non-coding downstream 107114 75597165 ~ 75597427 (+)
G545725 NA non-coding downstream 168244 75658295 ~ 75658516 (+)
G545742 NA non-coding downstream 196696 75686747 ~ 75689195 (+)
G545716 NA non-coding downstream 213439 75703490 ~ 75728642 (+)
G545757 NA non-coding downstream 243595 75733646 ~ 75734326 (+)
G545485 NA other upstream 180885 75237800 ~ 75238164 (+)
G544565 NA other upstream 1130911 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2031362 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2273702 73037953 ~ 73182742 (+)
G542890 NA other upstream 2652198 72765681 ~ 72766851 (+)
G546464 LOC106562315 other downstream 438177 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1397381 76827001 ~ 77038395 (+)
G547884 NA other downstream 1787941 77277992 ~ 77279354 (+)
G548000 NA other downstream 2022558 77512609 ~ 77523423 (+)
LOC110526614 mmp2 other downstream 2324324 77814375 ~ 77847797 (+)

Expression


Co-expression Network