G545772


Basic Information

Item Value
gene id G545772
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75773634 ~ 75773869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU617975
ccgtgcacctggccaccctggcgagcgtacactgcgcccagcccgccacaggagtcgctggtgcgcgatgagacaaggacacccccaccgaccaagccctccccaACCCGGGCGACgccaggccaattgtgcgtcgccccacggacctcccggtcgcggccggttatgacagagcctgggcgcgaacccaggactctgatggcacagctggcgctgcagtacagcgcccttaacca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU617975 True 236 lncRNA 0.69 1 75773634 75773869

Neighbor

gene id symbol gene type direction distance location
nod2 nod2 coding upstream 8343 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 71032 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 200731 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 277416 75474043 ~ 75498286 (+)
heatr3 LOC106587571 coding upstream 304993 75459659 ~ 75468641 (+)
cylda LOC100380700 coding downstream 5547 75779416 ~ 75815231 (+)
LOC118964933 chd9 coding downstream 830821 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 1053132 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 1721884 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1949956 77723825 ~ 77730489 (+)
G545769 NA non-coding upstream 2773 75770605 ~ 75770861 (+)
G545757 NA non-coding upstream 39308 75733646 ~ 75734326 (+)
G545716 NA non-coding upstream 44992 75703490 ~ 75728642 (+)
G545742 NA non-coding upstream 84439 75686747 ~ 75689195 (+)
G545725 NA non-coding upstream 115118 75658295 ~ 75658516 (+)
G545774 NA non-coding downstream 4932 75778801 ~ 75779033 (+)
G545790 NA non-coding downstream 46318 75820187 ~ 75820522 (+)
G546373 NA non-coding downstream 79768 75853637 ~ 75860809 (+)
G546404 NA non-coding downstream 104358 75878227 ~ 75878737 (+)
G546440 NA non-coding downstream 127649 75901518 ~ 75901753 (+)
G545601 NA other upstream 350882 75421861 ~ 75422752 (+)
G545485 NA other upstream 535470 75237800 ~ 75238164 (+)
G544565 NA other upstream 1485496 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2385947 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2628287 73037953 ~ 73182742 (+)
G546464 LOC106562315 other downstream 154359 75928228 ~ 75970674 (+)
G547884 NA other downstream 1504123 77277992 ~ 77279354 (+)
G548000 NA other downstream 1738740 77512609 ~ 77523423 (+)
LOC110526614 mmp2 other downstream 2040506 77814375 ~ 77847797 (+)

Expression


Co-expression Network