G545790


Basic Information

Item Value
gene id G545790
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75820187 ~ 75820522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU617998
taaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattgaatatttcaaacttttttaacaaatcaaaaactgaaaaatttggatgtgcaaaattattcagcccctttactttcagtgcagcaaactatctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtatcaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaagg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU617998 True 336 lncRNA 0.36 1 75820187 75820522

Neighbor

gene id symbol gene type direction distance location
cylda LOC100380700 coding upstream 4956 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 54896 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 117585 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 247284 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 323969 75474043 ~ 75498286 (+)
LOC118964933 chd9 coding downstream 784168 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 1006479 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 1675231 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1903303 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1993858 77814375 ~ 77847797 (+)
G545774 NA non-coding upstream 41154 75778801 ~ 75779033 (+)
G545772 NA non-coding upstream 46318 75773634 ~ 75773869 (+)
G545769 NA non-coding upstream 49326 75770605 ~ 75770861 (+)
G545757 NA non-coding upstream 85861 75733646 ~ 75734326 (+)
G545716 NA non-coding upstream 91545 75703490 ~ 75728642 (+)
G546373 NA non-coding downstream 33115 75853637 ~ 75860809 (+)
G546404 NA non-coding downstream 57705 75878227 ~ 75878737 (+)
G546440 NA non-coding downstream 80996 75901518 ~ 75901753 (+)
G546444 NA non-coding downstream 86031 75906553 ~ 75909615 (+)
G546446 NA non-coding downstream 91018 75911540 ~ 75911849 (+)
G545601 NA other upstream 397435 75421861 ~ 75422752 (+)
G545485 NA other upstream 582023 75237800 ~ 75238164 (+)
G544565 NA other upstream 1532049 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2432500 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2674840 73037953 ~ 73182742 (+)
G546464 LOC106562315 other downstream 107706 75928228 ~ 75970674 (+)
G547884 NA other downstream 1457470 77277992 ~ 77279354 (+)
G548000 NA other downstream 1692087 77512609 ~ 77523423 (+)

Expression


Co-expression Network