G546404


Basic Information

Item Value
gene id G546404
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75878227 ~ 75878737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU618668
atacatatgagaagagtaGTGCAAAATatttgtaaacattattaaagtgacttgtgttccaattattaaagtgtccagtgattttGGGTTCGATGCTTGGTCTTCATCAAACTATATATTTGATCCtgcttctcacagcaggaaaataaaccTGTAGCAGCAAGATTATGTGGATTATAgttacatttttgtaggggttgatacattttttgttagggcaaatcaagtctgacatttttaagtggaaattagaaactttagaagcctttttaaaccttgaatacactacaaattGCCTTCGACatcagagtgatcaaattaagatagcaGATATGTATCTGCGTTACAATAGCACCAGTTTTTAAATTCCCATGAGAAAACTATCGTTACGAATCTACCAGTTTCATTTGTCGTTTCAGTTGCATATATTCTTGGACATATTGGTATAGGAGTGGCATTGAACAATCAGTGTTCAAATAATACTTTGAATATCAAACATATTGTATAACAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU618668 True 511 lncRNA 0.32 1 75878227 75878737

Neighbor

gene id symbol gene type direction distance location
cylda LOC100380700 coding upstream 62996 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 112936 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 175625 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 305324 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 382009 75474043 ~ 75498286 (+)
LOC118964933 chd9 coding downstream 725953 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 948264 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 1617016 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1845088 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1935643 77814375 ~ 77847797 (+)
G546373 NA non-coding upstream 17418 75853637 ~ 75860809 (+)
G545790 NA non-coding upstream 57705 75820187 ~ 75820522 (+)
G545774 NA non-coding upstream 99194 75778801 ~ 75779033 (+)
G545772 NA non-coding upstream 104358 75773634 ~ 75773869 (+)
G545769 NA non-coding upstream 107366 75770605 ~ 75770861 (+)
G546440 NA non-coding downstream 22781 75901518 ~ 75901753 (+)
G546444 NA non-coding downstream 27816 75906553 ~ 75909615 (+)
G546446 NA non-coding downstream 32803 75911540 ~ 75911849 (+)
G546461 NA non-coding downstream 45170 75923907 ~ 75924173 (+)
G546472 NA non-coding downstream 65797 75944534 ~ 75959568 (+)
G545601 NA other upstream 455475 75421861 ~ 75422752 (+)
G545485 NA other upstream 640063 75237800 ~ 75238164 (+)
G544565 NA other upstream 1590089 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2490540 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2732880 73037953 ~ 73182742 (+)
G546464 LOC106562315 other downstream 49491 75928228 ~ 75970674 (+)
G547884 NA other downstream 1399255 77277992 ~ 77279354 (+)
G548000 NA other downstream 1633872 77512609 ~ 77523423 (+)

Expression


Co-expression Network