G546446


Basic Information

Item Value
gene id G546446
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75911540 ~ 75911849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU618710
gcggaacgtctctctctctctccatctctctctctctctagctctccatctcgttctctctagctctccatctctctctctagctctctatctctctctctctagctctccatctctctctctctagctctccatttctctctctctagctctctatctccctctctcgctctagctctccatctccctctctctagctatccatctctctctctccatctcgctctctctagctctccatctctctctctctagctctccatctctctatctctagctcttcatctctctctctcgcgctctccatctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU618710 True 310 lncRNA 0.51 1 75911540 75911849

Neighbor

gene id symbol gene type direction distance location
cylda LOC100380700 coding upstream 96309 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 146249 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 208938 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 338637 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 415322 75474043 ~ 75498286 (+)
LOC118964933 chd9 coding downstream 692841 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 915152 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 1583904 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1811976 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1902531 77814375 ~ 77847797 (+)
G546444 NA non-coding upstream 1925 75906553 ~ 75909615 (+)
G546440 NA non-coding upstream 9787 75901518 ~ 75901753 (+)
G546404 NA non-coding upstream 32803 75878227 ~ 75878737 (+)
G546373 NA non-coding upstream 50731 75853637 ~ 75860809 (+)
G545790 NA non-coding upstream 91018 75820187 ~ 75820522 (+)
G546461 NA non-coding downstream 12058 75923907 ~ 75924173 (+)
G546472 NA non-coding downstream 32685 75944534 ~ 75959568 (+)
G546475 NA non-coding downstream 53029 75964878 ~ 75967129 (+)
G546486 NA non-coding downstream 83561 75995410 ~ 75995643 (+)
G546488 NA non-coding downstream 90143 76001992 ~ 76008034 (+)
G545601 NA other upstream 488788 75421861 ~ 75422752 (+)
G545485 NA other upstream 673376 75237800 ~ 75238164 (+)
G544565 NA other upstream 1623402 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2523853 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2766193 73037953 ~ 73182742 (+)
G546464 LOC106562315 other downstream 16379 75928228 ~ 75970674 (+)
G547884 NA other downstream 1366143 77277992 ~ 77279354 (+)
G548000 NA other downstream 1600760 77512609 ~ 77523423 (+)

Expression


Co-expression Network