G546464 (LOC106562315)


Basic Information

Item Value
gene id G546464
gene name LOC106562315
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75928228 ~ 75970674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU618729
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtacatatgagAGGGAAAAAGTATCTAGTTGGTGGCAATCTCTTTGTTGTCCTCCATGAAACGTGTGAATCGGAAGTGGGTCCCGTTCTCGGCGTTGGCCATTTTCTCCAGGCCAGCCAGAGCGGCACTGGTTTCTGTACTGTGCAGCTTCTCCAGGTTGCCTGTGAGGCCACCCACGGGCGAGCTGCCCCCGTTCCCCATGCTCCCCGACAGAGACGGCAGGCCTCCGTTCTGGATGACAGAGATCTCGTTGGTCTTCATGGCCAGGCCGTTGGAGAAGGCTGCAGCATACTGGTTCCAGAAGCTAGCCGGGTCTCCGTTGCCCACCCTAGACAccatgtccttctggaagatctCTGGGAACTTGACAGGGTTGGTGCCCAGGAAGGCCATAGAGCCGTCTACAGAGAGCCGGCGGCCGCGTCTGGCAGGGGCGCTGTTCCA

Function

NR:

description
sal-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU618729 True 522 TUCP 0.58 2 75928228 75970674

Neighbor

gene id symbol gene type direction distance location
cylda LOC100380700 coding upstream 112997 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 162937 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 225626 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 355325 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 432010 75474043 ~ 75498286 (+)
LOC118964933 chd9 coding downstream 634016 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 856327 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 1525079 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1753151 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1843706 77814375 ~ 77847797 (+)
G546461 NA non-coding upstream 4055 75923907 ~ 75924173 (+)
G546446 NA non-coding upstream 16379 75911540 ~ 75911849 (+)
G546444 NA non-coding upstream 18613 75906553 ~ 75909615 (+)
G546440 NA non-coding upstream 26475 75901518 ~ 75901753 (+)
G546404 NA non-coding upstream 49491 75878227 ~ 75878737 (+)
G546486 NA non-coding downstream 24736 75995410 ~ 75995643 (+)
G546488 NA non-coding downstream 31318 76001992 ~ 76008034 (+)
G546570 NA non-coding downstream 95231 76065905 ~ 76066122 (+)
G546582 NA non-coding downstream 104124 76074798 ~ 76075231 (+)
G546608 NA non-coding downstream 139354 76110028 ~ 76110239 (+)
G545601 NA other upstream 505476 75421861 ~ 75422752 (+)
G545485 NA other upstream 690064 75237800 ~ 75238164 (+)
G544565 NA other upstream 1640090 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2540541 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2782881 73037953 ~ 73182742 (+)
G547884 NA other downstream 1307318 77277992 ~ 77279354 (+)
G548000 NA other downstream 1541935 77512609 ~ 77523423 (+)
LOC110526615 pcat2 other downstream 1891394 77848962 ~ 77866316 (+)

Expression


Co-expression Network