G546475


Basic Information

Item Value
gene id G546475
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75964878 ~ 75967129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU618744
AAACCATGCAAATACTATCTTTTGCAGCTACATGAGACCAAAGAGGATTACTTAAATGTAGAACAAACACGAAGGGTAAATTAAAAGTGTTAGAACTGGGTGGATAGTGGATATTTCCTTGTGAGTGTAACACAGGGCAAAGAAATCCTGCTTAATGTTTGTACTCACTATCTGGAAGTCTTGTCTCCCAACCAGCTGTGTACACGCTGTAGACTGTCACTGTTTTTTCCACAGGAAACCAAATCCATGAGAACCatcagaggagaagagggggagacatactggagctgaagagaagagagggggagacatgcTGGAgctgaagaggagaagagagggggagacatactggagctgaagaggagaagagagggggagacatACTGGAgctgaagaggagaagagagggtgagattCACTGGAgctgaagaggagaagagagggggaggcattCTGGAgctgaagaggagaagagagggtgagattCACTGGAgctgaagaggagaagagagggggaggcattCTGGAgctgaagaggagaagagagggggagacatactggagctgaagaggagaagagagggggagacatactggagctgaagaggagaagagaagagatttGAAAGCATACTCTAATGAGCTGATAGTCATAGAGAAtatgaacatttttattttattttattcacgAATCTGTTCACTCAATGATGAGTATGATTTACAATGAATTTTTAAAGTGTATATTACATATGATAAAAAAGTCCTGAAACTTGACACTCACTTGAGAGTCACTCTAGGAAGCTCCTTTTAGAGGCCCTTAGCTGCAGGCCTGTCACCTGGCTGGTATTGATTGACAGGTGTAGGCTGCGGTGCAAGTGTGGCTCGGTGGTCCTGTGTCTTGGGGCCGTGGAGTGTGGCTCAGCGTGGCTCACCATTGTTCTCAGCGGGTCTTAGATCACCCAGAGCCAGGCCAGAGACTCAGTGGGGAGTCCAGGCTCCACACCATACCAGGCTCTCCACACCACCAGGCCCCAGGCTACAGTTTGTATCGACTCGGCAGGCCTGACAGCCCAGGACGGGACAGTGAAGAAGGGGGGCTTTCGAGTACACAGGTCTGTGGAGCATAATCCACATTTCACTGGGAGGTTGGGTATGCAAGGTACACTGCATGAGTTCAAGTCCATAAAATATGTCTGATGGATTATAGAATTAAATAAGTGTTTGCTCCCTTGCTGTTGATTCTTTCATAACTAAAATTGCAAAAACAAAAAAGGATAGCAAATGACAAGTTATACATTTGCTAATTATAGAGCACAGACTTTACTGTAGAGACACTAAAACTAAAAGGACAGTAAAGTTACTTTGCTAATGTGTCCCATCCTCCCCTTCAGACATTACCACCTTAAACCAGTTAAGTCCATTAGACAACAACACTAAAACAGCATGTTATAAAGGCTGCAAAACAAACATCAATACCCGTAGTGGTGGAAACGAGACAGATCTACATCACTTATAAGAACGTTATGGAAGATGCACATGTGCATGAGTGTGAATTAAAAAGTGTGTATTCATCTTATTCTATAACACTGGATGGTGGCATGGAGACACACTCCaaaagcctgtctgtcagagagcCACATGGGCAGACTAGGGGCAGCCCACTCAGCCTGTGGAGATTGTGTTTCACCATGTTTCACCCCAGTCTTCCTGTGGTGCTGTGTTGTGAAGCAGAAAGCCACTACTGGGAGGCACAGTGGAAGAGATCAATTCTACACATTCCTGCCACCTGAGATTCAAGTGTTTCTGTAATGCTGCACAGCTCAATCAATACTTAACCAAACCTAGTAGGGCTGTTGCCTGCTGCACGCCTGGGGAAAAAGGCCCTCCTCCACCACACATCACTAGGACCACTCACTGAGGGTTTGTTACACAACTAAAAGCATGTAACTATTTCAATATTTCTCCTCATTGCATCCTTTTTCTCTCCTTTGACCACACAAGGGGAGCTGCTCCTTATGCTTATCCCACCATTTTCCATTCTCCTAAATCCCTGGCCGGGCTCTTGAGTTAAGGCTGGGTTATTTTTTATGATTATGTAATTAGCAATCATTGATGGTTTGCTCCCTAGTATCTGGGCTCTCAAGCCTCTCTGAAGATTTGATCTTTCTTTAAATAGCTGAATTAAAACGATATATACATTAAAAGGAGATATtcctg

Function

NR:

description
PREDICTED: prisilkin-39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU618744 True 2217 lncRNA 0.45 2 75964878 75967129

Neighbor

gene id symbol gene type direction distance location
cylda LOC100380700 coding upstream 149647 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 199587 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 262276 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 391975 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 468660 75474043 ~ 75498286 (+)
LOC118964933 chd9 coding downstream 637561 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 859872 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 1528624 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1756696 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1847251 77814375 ~ 77847797 (+)
G546472 NA non-coding upstream 5310 75944534 ~ 75959568 (+)
G546461 NA non-coding upstream 40705 75923907 ~ 75924173 (+)
G546446 NA non-coding upstream 53029 75911540 ~ 75911849 (+)
G546444 NA non-coding upstream 55263 75906553 ~ 75909615 (+)
G546440 NA non-coding upstream 63125 75901518 ~ 75901753 (+)
G546486 NA non-coding downstream 28281 75995410 ~ 75995643 (+)
G546488 NA non-coding downstream 34863 76001992 ~ 76008034 (+)
G546570 NA non-coding downstream 98776 76065905 ~ 76066122 (+)
G546582 NA non-coding downstream 107669 76074798 ~ 76075231 (+)
G546608 NA non-coding downstream 142899 76110028 ~ 76110239 (+)
G545601 NA other upstream 542126 75421861 ~ 75422752 (+)
G545485 NA other upstream 726714 75237800 ~ 75238164 (+)
G544565 NA other upstream 1676740 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2577191 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2819531 73037953 ~ 73182742 (+)
G547884 NA other downstream 1310863 77277992 ~ 77279354 (+)
G548000 NA other downstream 1545480 77512609 ~ 77523423 (+)
LOC110526615 pcat2 other downstream 1894939 77848962 ~ 77866316 (+)

Expression


Co-expression Network