G546570


Basic Information

Item Value
gene id G546570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76065905 ~ 76066122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU618843
gaaccatagcACCATACACAGTGTAACTCAAAAGACCTGGGCTTTCAAACGGAAGAATAACTGGGTTGAATTATGGATAGATCTGAATAGTGTCTCTTATCTACAGATGGCTGAACACACGACAATCCTAAGGCTGGCCTGTATAATTGTATCACTAATAAGCAGTAAGGCCAATTAGGTCTATAAGTGTGCTGTAATCACTTGGacaggagagatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU618843 True 218 lncRNA 0.41 1 76065905 76066122

Neighbor

gene id symbol gene type direction distance location
cylda LOC100380700 coding upstream 250674 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 300614 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 363303 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 493002 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 569687 75474043 ~ 75498286 (+)
LOC118964933 chd9 coding downstream 538568 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 760879 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 1429631 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1657703 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1748258 77814375 ~ 77847797 (+)
G546488 NA non-coding upstream 57871 76001992 ~ 76008034 (+)
G546486 NA non-coding upstream 70262 75995410 ~ 75995643 (+)
G546475 NA non-coding upstream 98776 75964878 ~ 75967129 (+)
G546472 NA non-coding upstream 106337 75944534 ~ 75959568 (+)
G546461 NA non-coding upstream 141732 75923907 ~ 75924173 (+)
G546582 NA non-coding downstream 8676 76074798 ~ 76075231 (+)
G546608 NA non-coding downstream 43906 76110028 ~ 76110239 (+)
G546617 NA non-coding downstream 53317 76119439 ~ 76119696 (+)
G546618 NA non-coding downstream 54246 76120368 ~ 76120632 (+)
G546623 NA non-coding downstream 57201 76123323 ~ 76123641 (+)
G546464 LOC106562315 other upstream 95231 75928228 ~ 75970674 (+)
G545601 NA other upstream 643153 75421861 ~ 75422752 (+)
G545485 NA other upstream 827741 75237800 ~ 75238164 (+)
G544565 NA other upstream 1777767 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2678218 73190979 ~ 73392251 (+)
G547884 NA other downstream 1211870 77277992 ~ 77279354 (+)
G548000 NA other downstream 1446487 77512609 ~ 77523423 (+)
LOC110526615 pcat2 other downstream 1795946 77848962 ~ 77866316 (+)

Expression


Co-expression Network