G546608


Basic Information

Item Value
gene id G546608
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76110028 ~ 76110239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU618883
atatacagggggcaccggtaccgagtcagtgtgcaggggtacaggctagttggggtaatctgtacatgtaggtgggggcgaagtgactatgcataggtaacaaacaaacagcgagtagcagcagtgtgcaaGGGGGTGAATGTAAATTATCCGGTGGCAATTTTTATGAATTgctcagcagtctaatggcttgggggtagaagatattgagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU618883 True 212 lncRNA 0.49 1 76110028 76110239

Neighbor

gene id symbol gene type direction distance location
cylda LOC100380700 coding upstream 294797 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 344737 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 407426 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 537125 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 613810 75474043 ~ 75498286 (+)
LOC118964933 chd9 coding downstream 494451 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 716762 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 1385514 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1613586 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1704141 77814375 ~ 77847797 (+)
G546582 NA non-coding upstream 34797 76074798 ~ 76075231 (+)
G546570 NA non-coding upstream 43906 76065905 ~ 76066122 (+)
G546488 NA non-coding upstream 101994 76001992 ~ 76008034 (+)
G546486 NA non-coding upstream 114385 75995410 ~ 75995643 (+)
G546475 NA non-coding upstream 142899 75964878 ~ 75967129 (+)
G546617 NA non-coding downstream 9200 76119439 ~ 76119696 (+)
G546618 NA non-coding downstream 10129 76120368 ~ 76120632 (+)
G546623 NA non-coding downstream 13084 76123323 ~ 76123641 (+)
G546795 NA non-coding downstream 141236 76251475 ~ 76251682 (+)
G546802 LOC106613263 non-coding downstream 146556 76256795 ~ 76257040 (+)
G546464 LOC106562315 other upstream 139354 75928228 ~ 75970674 (+)
G545601 NA other upstream 687276 75421861 ~ 75422752 (+)
G545485 NA other upstream 871864 75237800 ~ 75238164 (+)
G544565 NA other upstream 1821890 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2722341 73190979 ~ 73392251 (+)
G547884 NA other downstream 1167753 77277992 ~ 77279354 (+)
G548000 NA other downstream 1402370 77512609 ~ 77523423 (+)
LOC110526615 pcat2 other downstream 1751829 77848962 ~ 77866316 (+)

Expression


Co-expression Network