G546623


Basic Information

Item Value
gene id G546623
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76123323 ~ 76123641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU618899
GAATATAGTCAAGCTGACGATTCTGCTTAGTAGATGAACAGTTATACACAGACTTGAGGGAGACATAAGAGACACATGAGTATGTGGTTTAAGTTATGGAGACATTACAAATTAGGTTACGATGATCTATTTACAGTGGTGGAGAGGGGGTCTTCATAAATGAGGAATTCCATGTGCAGCACTTGTGTTTATAGGCAGAGAGTAATTGTTTTGCCCAATCCTATGTCATCACACATTTCAGTCAGGCCTTCTATGGTCTCTGATTTATTATTGAAATCTTCCAAACTGCCGGTTATCACTGTGTTTATATTATTACTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU618899 True 319 lncRNA 0.38 1 76123323 76123641

Neighbor

gene id symbol gene type direction distance location
cylda LOC100380700 coding upstream 308092 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 358032 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 420721 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 550420 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 627105 75474043 ~ 75498286 (+)
LOC118964933 chd9 coding downstream 481049 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 703360 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 1372112 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1600184 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1690739 77814375 ~ 77847797 (+)
G546618 NA non-coding upstream 2691 76120368 ~ 76120632 (+)
G546617 NA non-coding upstream 3627 76119439 ~ 76119696 (+)
G546608 NA non-coding upstream 13084 76110028 ~ 76110239 (+)
G546582 NA non-coding upstream 48092 76074798 ~ 76075231 (+)
G546570 NA non-coding upstream 57201 76065905 ~ 76066122 (+)
G546795 NA non-coding downstream 127834 76251475 ~ 76251682 (+)
G546802 LOC106613263 non-coding downstream 133154 76256795 ~ 76257040 (+)
G546809 NA non-coding downstream 138596 76262237 ~ 76262442 (+)
G546886 NA non-coding downstream 230788 76354429 ~ 76354652 (+)
G546900 NA non-coding downstream 250552 76374193 ~ 76374464 (+)
G546464 LOC106562315 other upstream 152649 75928228 ~ 75970674 (+)
G545601 NA other upstream 700571 75421861 ~ 75422752 (+)
G545485 NA other upstream 885159 75237800 ~ 75238164 (+)
G544565 NA other upstream 1835185 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2735636 73190979 ~ 73392251 (+)
G547884 NA other downstream 1154351 77277992 ~ 77279354 (+)
G548000 NA other downstream 1388968 77512609 ~ 77523423 (+)
LOC110526615 pcat2 other downstream 1738427 77848962 ~ 77866316 (+)

Expression


Co-expression Network