G547163


Basic Information

Item Value
gene id G547163
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76522782 ~ 76523600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU619461
gacccatacaggaccaccatctataccaactgacccatacaggaccaccatctataccaactgacccatacaggaccaccaactataccaaatgacccatacaggaccaccatCTATACCAAATGACCCATACAGGACCCCCATCTATACCAACTGAACCATACAGGACCACTaactataccaactgacccatacagAACCACTaactataccaactgacccaCACAGGACCACTaactataccaactgacccatacaggacctccaactataccaactgacccatacaggacaaccaactataccaactgacccatacaggaccaccaactctatgaaccatacaggaccaccaactctaTGAACCGAaccatacaggaccaccaactataccaactgacccacacaggaccaccaactataccaactgacccatacaggaccaccaactctatgaactgacccatacaggaccaccaactctaTGAACTGACCCATACAGAACCAAcaactataccaactgacccatGCAGGACCACCAACTCTATGaactgacccatacaggaccaccaactctatgaactgacccatacaggacctccaactataccaactgacccacacaggaccaccaactataccaactgacccatacaggaccaccaactctaTGATctgacccatacaggaccaccaactctaTGAATTGACCCATACAGGACaaccaactataccaactgacccacacaggaccaccaactctatgaactgacccatacaggaccaccaactataccaactgacccatacaggaccacc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106613386

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU619461 True 819 lncRNA 0.48 1 76522782 76523600

Neighbor

gene id symbol gene type direction distance location
cylda LOC100380700 coding upstream 707551 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 757491 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 820180 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 949879 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 1026564 75474043 ~ 75498286 (+)
LOC118964933 chd9 coding downstream 81090 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 303401 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 972153 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1200225 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1290780 77814375 ~ 77847797 (+)
G546947 NA non-coding upstream 89501 76430843 ~ 76433281 (+)
G546907 NA non-coding upstream 123758 76389560 ~ 76399024 (+)
G546900 NA non-coding upstream 148318 76374193 ~ 76374464 (+)
G546886 NA non-coding upstream 168130 76354429 ~ 76354652 (+)
G546809 NA non-coding upstream 260340 76262237 ~ 76262442 (+)
G547229 NA non-coding downstream 87808 76611408 ~ 76612985 (+)
G547239 chd9 non-coding downstream 102598 76626198 ~ 76629445 (+)
G547183 NA non-coding downstream 117831 76641431 ~ 76641992 (+)
G547278 NA non-coding downstream 152897 76676497 ~ 76677048 (+)
G546464 LOC106562315 other upstream 552108 75928228 ~ 75970674 (+)
G545601 NA other upstream 1100030 75421861 ~ 75422752 (+)
G545485 NA other upstream 1284618 75237800 ~ 75238164 (+)
G544565 NA other upstream 2234644 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 3135095 73190979 ~ 73392251 (+)
G547884 NA other downstream 754392 77277992 ~ 77279354 (+)
G548000 NA other downstream 989009 77512609 ~ 77523423 (+)
LOC110526615 pcat2 other downstream 1338468 77848962 ~ 77866316 (+)

Expression


Co-expression Network