Gene
RNA
| Item | Value |
|---|---|
| gene id | G547300 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 76705624 ~ 76706152 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| chromodomain-helicase-DNA-binding protein 9-like isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU619625 | True | 529 | lncRNA | 0.57 | 1 | 76705624 | 76706152 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118964933 | chd9 | coding | upstream | 85503 | 76604690 ~ 76620121 (+) |
| cylda | LOC100380700 | coding | upstream | 890393 | 75779416 ~ 75815231 (+) |
| nod2 | nod2 | coding | upstream | 940333 | 75752937 ~ 75765291 (+) |
| LOC110526967 | LOC106587577 | coding | upstream | 1003022 | 75664369 ~ 75702602 (+) |
| LOC110526596 | LOC106587576 | coding | upstream | 1132721 | 75498696 ~ 75572903 (+) |
| LOC110526968 | fto | coding | downstream | 120849 | 76827001 ~ 77038395 (+) |
| irx5a | irx5 | coding | downstream | 789601 | 77495753 ~ 77499433 (+) |
| LOC110526613 | LOC106587615 | coding | downstream | 1017673 | 77723825 ~ 77730489 (+) |
| LOC110526614 | mmp2 | coding | downstream | 1108228 | 77814375 ~ 77847797 (+) |
| LOC110526615 | pcat2 | coding | downstream | 1142810 | 77848962 ~ 77866316 (+) |
| G547278 | NA | non-coding | upstream | 28576 | 76676497 ~ 76677048 (+) |
| G547183 | NA | non-coding | upstream | 63632 | 76641431 ~ 76641992 (+) |
| G547239 | chd9 | non-coding | upstream | 76179 | 76626198 ~ 76629445 (+) |
| G547229 | NA | non-coding | upstream | 92639 | 76611408 ~ 76612985 (+) |
| G547303 | NA | non-coding | downstream | 4105 | 76710257 ~ 76710510 (+) |
| G547304 | NA | non-coding | downstream | 5062 | 76711214 ~ 76711438 (+) |
| G547305 | NA | non-coding | downstream | 5657 | 76711809 ~ 76712042 (+) |
| G547308 | NA | non-coding | downstream | 9601 | 76715753 ~ 76716148 (+) |
| G547312 | NA | non-coding | downstream | 13919 | 76720071 ~ 76720370 (+) |
| G546464 | LOC106562315 | other | upstream | 734950 | 75928228 ~ 75970674 (+) |
| G545601 | NA | other | upstream | 1282872 | 75421861 ~ 75422752 (+) |
| G545485 | NA | other | upstream | 1467460 | 75237800 ~ 75238164 (+) |
| G544565 | NA | other | upstream | 2417486 | 74287778 ~ 74288138 (+) |
| LOC100136290 | sox6 | other | upstream | 3317937 | 73190979 ~ 73392251 (+) |
| G547884 | NA | other | downstream | 571840 | 77277992 ~ 77279354 (+) |
| G548000 | NA | other | downstream | 806457 | 77512609 ~ 77523423 (+) |
