G547415


Basic Information

Item Value
gene id G547415
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76738710 ~ 76739521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU619759
ACCCAGTAGGTTTTGtagagtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaactacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacatcttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcatt
>TU619760
tgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacatcttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcatt
>TU619762
tgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacatcttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggtgatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaggttcaattttggtttcatctgac

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU619759 False 532 lncRNA 0.39 1 76738710 76739241
TU619760 False 316 lncRNA 0.41 1 76738926 76739241
TU619762 True 596 lncRNA 0.43 1 76738926 76739521

Neighbor

gene id symbol gene type direction distance location
LOC118964933 chd9 coding upstream 118589 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 923479 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 973419 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 1036108 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 1165807 75498696 ~ 75572903 (+)
LOC110526968 fto coding downstream 87480 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 756232 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 984304 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1074859 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 1109441 77848962 ~ 77866316 (+)
G547282 NA non-coding upstream 8342 76727956 ~ 76730368 (+)
G547312 NA non-coding upstream 18340 76720071 ~ 76720370 (+)
G547308 NA non-coding upstream 22562 76715753 ~ 76716148 (+)
G547305 NA non-coding upstream 26668 76711809 ~ 76712042 (+)
G547304 NA non-coding upstream 27272 76711214 ~ 76711438 (+)
G547418 LOC106604990 non-coding downstream 2618 76742139 ~ 76742402 (+)
G547419 NA non-coding downstream 6063 76745584 ~ 76749067 (+)
G547455 NA non-coding downstream 31560 76771081 ~ 76771350 (+)
G547514 NA non-coding downstream 79440 76818961 ~ 76819231 (+)
G547527 NA non-coding downstream 98127 76837648 ~ 76837856 (+)
G546464 LOC106562315 other upstream 768036 75928228 ~ 75970674 (+)
G545601 NA other upstream 1315958 75421861 ~ 75422752 (+)
G545485 NA other upstream 1500546 75237800 ~ 75238164 (+)
G544565 NA other upstream 2450572 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 3351023 73190979 ~ 73392251 (+)
G547884 NA other downstream 538471 77277992 ~ 77279354 (+)
G548000 NA other downstream 773088 77512609 ~ 77523423 (+)

Expression


Co-expression Network