G547455


Basic Information

Item Value
gene id G547455
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76771081 ~ 76771350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU619807
AAAGATAATATTCTGCTATTCAACCTGAATCATACCACCAAGACATGACTGATTTTACCCTCCTGACACGCAGAGGAAACCACCaaaagatagcgagagagagatagatagagagagggagaaagagagagagagaaagagagagagtgagaaagagagagagtgagaaagagaaagagagatcgagagagagagtaagaaagagagagagagtaagacagagagagagtaagaaagagagagagactaagacagagagagatactgtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU619807 True 270 lncRNA 0.42 1 76771081 76771350

Neighbor

gene id symbol gene type direction distance location
LOC118964933 chd9 coding upstream 150960 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 955850 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1005790 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 1068479 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 1198178 75498696 ~ 75572903 (+)
LOC110526968 fto coding downstream 55651 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 724403 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 952475 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1043030 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 1077612 77848962 ~ 77866316 (+)
G547419 NA non-coding upstream 22014 76745584 ~ 76749067 (+)
G547418 LOC106604990 non-coding upstream 28679 76742139 ~ 76742402 (+)
G547415 NA non-coding upstream 31560 76738710 ~ 76739521 (+)
G547282 NA non-coding upstream 40713 76727956 ~ 76730368 (+)
G547312 NA non-coding upstream 50711 76720071 ~ 76720370 (+)
G547514 NA non-coding downstream 47611 76818961 ~ 76819231 (+)
G547527 NA non-coding downstream 66298 76837648 ~ 76837856 (+)
G547528 NA non-coding downstream 70150 76841500 ~ 76841975 (+)
G547534 NA non-coding downstream 87542 76858892 ~ 76859126 (+)
G546464 LOC106562315 other upstream 800407 75928228 ~ 75970674 (+)
G545601 NA other upstream 1348329 75421861 ~ 75422752 (+)
G545485 NA other upstream 1532917 75237800 ~ 75238164 (+)
G544565 NA other upstream 2482943 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 3383394 73190979 ~ 73392251 (+)
G547884 NA other downstream 506642 77277992 ~ 77279354 (+)
G548000 NA other downstream 741259 77512609 ~ 77523423 (+)

Expression


Co-expression Network