G547562


Basic Information

Item Value
gene id G547562
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76916482 ~ 76932885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU619927
attatagactctagaccctgcattatagactctataccctgcattatatactctactccctgcattatagactctactccctgcattatagactctataccctgcattatatactctactccctgcaTTATAGacactactccctgcattatagactctataccctgcattatatactctactccctgcattatatactcgaCTCCatgcattatatactctataccctgcattatatact

Function

NR:

description
protein piccolo-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU619927 True 241 lncRNA 0.38 2 76916482 76932885

Neighbor

gene id symbol gene type direction distance location
LOC118964933 chd9 coding upstream 296361 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1101251 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1151191 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 1213880 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 1343579 75498696 ~ 75572903 (+)
irx5a irx5 coding downstream 562868 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 790940 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 881495 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 916077 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 1030364 77963249 ~ 77963303 (+)
G547534 NA non-coding upstream 57356 76858892 ~ 76859126 (+)
G547528 NA non-coding upstream 74507 76841500 ~ 76841975 (+)
G547527 NA non-coding upstream 78626 76837648 ~ 76837856 (+)
G547514 NA non-coding upstream 97251 76818961 ~ 76819231 (+)
G547455 NA non-coding upstream 145132 76771081 ~ 76771350 (+)
G547604 NA non-coding downstream 64266 76997151 ~ 76997761 (+)
G547621 NA non-coding downstream 88283 77021168 ~ 77022554 (+)
G547626 NA non-coding downstream 96874 77029759 ~ 77030948 (+)
G547757 NA non-coding downstream 137646 77070531 ~ 77070771 (+)
G547800 NA non-coding downstream 182235 77115120 ~ 77115366 (+)
G546464 LOC106562315 other upstream 945808 75928228 ~ 75970674 (+)
G545601 NA other upstream 1493730 75421861 ~ 75422752 (+)
G545485 NA other upstream 1678318 75237800 ~ 75238164 (+)
G544565 NA other upstream 2628344 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 3528795 73190979 ~ 73392251 (+)
G547884 NA other downstream 345107 77277992 ~ 77279354 (+)
G548000 NA other downstream 579724 77512609 ~ 77523423 (+)
G548703 NA other downstream 1487975 78420860 ~ 78496470 (+)

Expression


Co-expression Network