G547800


Basic Information

Item Value
gene id G547800
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77115120 ~ 77115366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU620217
ctctctctctcactggccaTTCCTTAACCTGTTTGTGCACCACTTCCACAGTTAATAATAAATATGGGCTATAAAACATACTTTGGGGCACATGAGTTGCAGGTCCAAATCTTTGACATACTACAGAGAGAGCTTTTCTGTATAGCtcttttcaaatccaatgtgtAAAGTAAACTCAATAACATGTTGGACTGGTGTGGAAAGGCCTGTAACCCTGTGTACCAGAGATATATCGTTGTGGTGGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU620217 True 247 lncRNA 0.41 1 77115120 77115366

Neighbor

gene id symbol gene type direction distance location
LOC110526968 fto coding upstream 76725 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 494999 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1299889 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1349829 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 1412518 75664369 ~ 75702602 (+)
irx5a irx5 coding downstream 380387 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 608459 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 699014 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 733596 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 847883 77963249 ~ 77963303 (+)
G547757 NA non-coding upstream 44349 77070531 ~ 77070771 (+)
G547626 NA non-coding upstream 84172 77029759 ~ 77030948 (+)
G547621 NA non-coding upstream 92566 77021168 ~ 77022554 (+)
G547604 NA non-coding upstream 117359 76997151 ~ 76997761 (+)
G547803 NA non-coding downstream 1120 77116486 ~ 77116711 (+)
G547810 NA non-coding downstream 19771 77135137 ~ 77135346 (+)
G547835 NA non-coding downstream 73304 77188670 ~ 77188881 (+)
G547839 NA non-coding downstream 89625 77204991 ~ 77205376 (+)
G547845 NA non-coding downstream 97121 77212487 ~ 77212695 (+)
G546464 LOC106562315 other upstream 1144446 75928228 ~ 75970674 (+)
G545601 NA other upstream 1692368 75421861 ~ 75422752 (+)
G545485 NA other upstream 1876956 75237800 ~ 75238164 (+)
G544565 NA other upstream 2826982 74287778 ~ 74288138 (+)
G547884 NA other downstream 162626 77277992 ~ 77279354 (+)
G548000 NA other downstream 397243 77512609 ~ 77523423 (+)
G548703 NA other downstream 1305494 78420860 ~ 78496470 (+)

Expression


Co-expression Network