G547881


Basic Information

Item Value
gene id G547881
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77265578 ~ 77265813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU620299
tgtctctagagagttgaaaacagcaggtctgggacaggtagcacgtccggtgaacaggtcaggattccatagccgcaggcagaacagttgaaactggagcagcagcacggccaggtggactgggacagcaaggagtcatcatgccaggtagtcctgaggcatggtacAAGGGCTCAGGtcatccgagagagagaaagaaagagagaaagagagaattagagagagcatacttaaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU620299 True 236 lncRNA 0.51 1 77265578 77265813

Neighbor

gene id symbol gene type direction distance location
LOC110526968 fto coding upstream 227183 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 645457 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1450347 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1500287 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 1562976 75664369 ~ 75702602 (+)
irx5a irx5 coding downstream 229940 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 458012 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 548567 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 583149 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 697436 77963249 ~ 77963303 (+)
G547845 NA non-coding upstream 52883 77212487 ~ 77212695 (+)
G547839 NA non-coding upstream 60202 77204991 ~ 77205376 (+)
G547835 NA non-coding upstream 76697 77188670 ~ 77188881 (+)
G547810 NA non-coding upstream 130232 77135137 ~ 77135346 (+)
G547803 NA non-coding upstream 148867 77116486 ~ 77116711 (+)
G547892 NA non-coding downstream 40871 77306684 ~ 77308264 (+)
G547896 NA non-coding downstream 44591 77310404 ~ 77311043 (+)
G547962 NA non-coding downstream 168053 77433866 ~ 77434088 (+)
G547963 NA non-coding downstream 170346 77436159 ~ 77437031 (+)
G547980 NA non-coding downstream 213792 77479605 ~ 77479816 (+)
G546464 LOC106562315 other upstream 1294904 75928228 ~ 75970674 (+)
G545601 NA other upstream 1842826 75421861 ~ 75422752 (+)
G545485 NA other upstream 2027414 75237800 ~ 75238164 (+)
G544565 NA other upstream 2977440 74287778 ~ 74288138 (+)
G547884 NA other downstream 12179 77277992 ~ 77279354 (+)
G548000 NA other downstream 246796 77512609 ~ 77523423 (+)
G548703 NA other downstream 1155047 78420860 ~ 78496470 (+)

Expression


Co-expression Network