G547962


Basic Information

Item Value
gene id G547962
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77433866 ~ 77434088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU620399
aagacacataaccactacagccactaagacacataaccactacagccattaagacacagaaccactacagccagtaagacacgtaaccactacagccaataagacacacaaccaatacagccaataagacacataaccactacagccaataagacacataaccactagagtcaataagacacaaccactacaggcagtaagacacataaccactacagccaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU620399 True 223 lncRNA 0.42 1 77433866 77434088

Neighbor

gene id symbol gene type direction distance location
LOC110526968 fto coding upstream 395471 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 813745 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1618635 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1668575 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 1731264 75664369 ~ 75702602 (+)
irx5a irx5 coding downstream 61665 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 289737 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 380292 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 414874 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 529161 77963249 ~ 77963303 (+)
G547896 NA non-coding upstream 122823 77310404 ~ 77311043 (+)
G547892 NA non-coding upstream 125602 77306684 ~ 77308264 (+)
G547881 NA non-coding upstream 168053 77265578 ~ 77265813 (+)
G547845 NA non-coding upstream 221171 77212487 ~ 77212695 (+)
G547839 NA non-coding upstream 228490 77204991 ~ 77205376 (+)
G547963 NA non-coding downstream 2071 77436159 ~ 77437031 (+)
G547980 NA non-coding downstream 45517 77479605 ~ 77479816 (+)
G548024 NA non-coding downstream 112269 77546357 ~ 77548387 (+)
G548033 NA non-coding downstream 134225 77568313 ~ 77568950 (+)
G548315 NA non-coding downstream 215493 77649581 ~ 77649791 (+)
G547884 NA other upstream 154512 77277992 ~ 77279354 (+)
G546464 LOC106562315 other upstream 1463192 75928228 ~ 75970674 (+)
G545601 NA other upstream 2011114 75421861 ~ 75422752 (+)
G545485 NA other upstream 2195702 75237800 ~ 75238164 (+)
G548000 NA other downstream 78521 77512609 ~ 77523423 (+)
G548703 NA other downstream 986772 78420860 ~ 78496470 (+)
G549342 NA other downstream 1335168 78769256 ~ 78769907 (+)

Expression


Co-expression Network