G547963


Basic Information

Item Value
gene id G547963
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77436159 ~ 77437031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU620400
taagtcACATAACCACTACATGCAGTAAGACAGATAACCACTACAGCATgtaagacacaaccactacagccaataagacacataacaactacagccagtaagacacataaccactacagccagtaagacacaacgGCTACAGCcaaaagacacataaccactatagccagtaagacacataaccactacagccagtaagacacataaccactacagccaataagacacataaccactacagccaataagacacataaccactacagtcaataagacacataaccacaacagccagtcagacacataaccactacagccaataagacacataaccactacagccaataagacacaaccactacaggcaataagacacaaccactatagccagtaagacacataaccactacagccaataagacacataaccactacatgcAGTAAGACAGATAACCACTACAGCATgtaagacacaaccactacagccaataagactcataacaactacagccagtaagacacataaccactacagctaGTAAGACACAAcggctacagccaataagacacataaccactacagtcaataagacacataaccactacagctaGTAAGACACAACGGctacagtcaataagacacataaccacaacagccagtaagacacataaacactacagccagtaagacacataaccactacagccaataagacacataaccactagcGCCAAAAAAGACACAATCACTACAGCcattaagacacataaccactacagccaataagacacataaccacaacagccaataagacacaaccactacaggcaataagacacaaccactatagccagtaagacacataaccacta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU620400 True 873 lncRNA 0.41 1 77436159 77437031

Neighbor

gene id symbol gene type direction distance location
LOC110526968 fto coding upstream 397764 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 816038 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1620928 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1670868 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 1733557 75664369 ~ 75702602 (+)
irx5a irx5 coding downstream 58722 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 286794 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 377349 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 411931 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 526218 77963249 ~ 77963303 (+)
G547962 NA non-coding upstream 2071 77433866 ~ 77434088 (+)
G547896 NA non-coding upstream 125116 77310404 ~ 77311043 (+)
G547892 NA non-coding upstream 127895 77306684 ~ 77308264 (+)
G547881 NA non-coding upstream 170346 77265578 ~ 77265813 (+)
G547845 NA non-coding upstream 223464 77212487 ~ 77212695 (+)
G547980 NA non-coding downstream 42574 77479605 ~ 77479816 (+)
G548024 NA non-coding downstream 109326 77546357 ~ 77548387 (+)
G548033 NA non-coding downstream 131282 77568313 ~ 77568950 (+)
G548315 NA non-coding downstream 212550 77649581 ~ 77649791 (+)
G548317 NA non-coding downstream 213964 77650995 ~ 77651198 (+)
G547884 NA other upstream 156805 77277992 ~ 77279354 (+)
G546464 LOC106562315 other upstream 1465485 75928228 ~ 75970674 (+)
G545601 NA other upstream 2013407 75421861 ~ 75422752 (+)
G545485 NA other upstream 2197995 75237800 ~ 75238164 (+)
G548000 NA other downstream 75578 77512609 ~ 77523423 (+)
G548703 NA other downstream 983829 78420860 ~ 78496470 (+)
G549342 NA other downstream 1332225 78769256 ~ 78769907 (+)

Expression


Co-expression Network