G547980


Basic Information

Item Value
gene id G547980
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77479605 ~ 77479816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU620419
CCTCATCAAATGTCTGTGGTTGTTGATGTACAGTGTTAACTTGTAACACGTTTTGTCCAAACCTCTGCTTTGTCCAAACCTCCACTTTGCTCTGCTCTTCAAAGGATCCGCCACAGCATTCAAAAGGATTATTTAGCACTTGCTCTGTCCTCTCTCAAGTTCGAACAGTCTGCAACAGCGAGGCAACTTGCTTTAGTTGTTCTTTTCAAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU620419 True 212 lncRNA 0.44 1 77479605 77479816

Neighbor

gene id symbol gene type direction distance location
LOC110526968 fto coding upstream 441210 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 859484 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1664374 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1714314 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 1777003 75664369 ~ 75702602 (+)
irx5a irx5 coding downstream 15937 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 244009 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 334564 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 369146 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 483433 77963249 ~ 77963303 (+)
G547963 NA non-coding upstream 42574 77436159 ~ 77437031 (+)
G547962 NA non-coding upstream 45517 77433866 ~ 77434088 (+)
G547896 NA non-coding upstream 168562 77310404 ~ 77311043 (+)
G547892 NA non-coding upstream 171341 77306684 ~ 77308264 (+)
G547881 NA non-coding upstream 213792 77265578 ~ 77265813 (+)
G548024 NA non-coding downstream 66541 77546357 ~ 77548387 (+)
G548033 NA non-coding downstream 88497 77568313 ~ 77568950 (+)
G548315 NA non-coding downstream 169765 77649581 ~ 77649791 (+)
G548317 NA non-coding downstream 171179 77650995 ~ 77651198 (+)
G548347 NA non-coding downstream 202797 77682613 ~ 77682835 (+)
G547884 NA other upstream 200251 77277992 ~ 77279354 (+)
G546464 LOC106562315 other upstream 1508931 75928228 ~ 75970674 (+)
G545601 NA other upstream 2056853 75421861 ~ 75422752 (+)
G545485 NA other upstream 2241441 75237800 ~ 75238164 (+)
G548000 NA other downstream 32793 77512609 ~ 77523423 (+)
G548703 NA other downstream 941044 78420860 ~ 78496470 (+)
G549342 NA other downstream 1289440 78769256 ~ 78769907 (+)

Expression


Co-expression Network