G548000


Basic Information

Item Value
gene id G548000
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77512609 ~ 77523423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU620456
cgacaatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacacgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttctttagcagggacagggaagatggttaaaat

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU620456 True 502 TUCP 0.45 2 77512609 77523423

Neighbor

gene id symbol gene type direction distance location
irx5a irx5 coding upstream 13176 77495753 ~ 77499433 (+)
LOC110526968 fto coding upstream 474214 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 892488 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1697378 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1747318 75752937 ~ 75765291 (+)
LOC110526613 LOC106587615 coding downstream 200402 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 290957 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 325539 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 439826 77963249 ~ 77963303 (+)
LOC110526617 LOC106562414 coding downstream 444744 77968167 ~ 78042147 (+)
G547980 NA non-coding upstream 32793 77479605 ~ 77479816 (+)
G547963 NA non-coding upstream 75578 77436159 ~ 77437031 (+)
G547962 NA non-coding upstream 78521 77433866 ~ 77434088 (+)
G547896 NA non-coding upstream 201566 77310404 ~ 77311043 (+)
G547892 NA non-coding upstream 204345 77306684 ~ 77308264 (+)
G548024 NA non-coding downstream 22934 77546357 ~ 77548387 (+)
G548033 NA non-coding downstream 44890 77568313 ~ 77568950 (+)
G548315 NA non-coding downstream 126158 77649581 ~ 77649791 (+)
G548317 NA non-coding downstream 127572 77650995 ~ 77651198 (+)
G548347 NA non-coding downstream 159190 77682613 ~ 77682835 (+)
G547884 NA other upstream 233255 77277992 ~ 77279354 (+)
G546464 LOC106562315 other upstream 1541935 75928228 ~ 75970674 (+)
G545601 NA other upstream 2089857 75421861 ~ 75422752 (+)
G545485 NA other upstream 2274445 75237800 ~ 75238164 (+)
G548703 NA other downstream 897437 78420860 ~ 78496470 (+)
G549342 NA other downstream 1245833 78769256 ~ 78769907 (+)
G549345 NA other downstream 1248689 78772112 ~ 78772557 (+)

Expression


Co-expression Network