G548024


Basic Information

Item Value
gene id G548024
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77546357 ~ 77548387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU620483
actccaacactcagacatcattaacagatagccagggtcacactccaacactcagacatcattaacagatagccagggacagactccaacactcagacatcatttacagatagccagggacacactccaacactcagacatcattaacagatagccagggacagactccaacactcagacatcatttacagatagccagggacacactccaacactcagacatcattaacagatagccagggacacactccaacactcagacatcattaacagatagccagggacacactccaacactcagacatcattaacagatagccagggacacactccaacactcagacatcattaacagatagcctgggacacactccaacactcagacatcatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU620483 True 391 lncRNA 0.46 2 77546357 77548387

Neighbor

gene id symbol gene type direction distance location
irx5a irx5 coding upstream 46924 77495753 ~ 77499433 (+)
LOC110526968 fto coding upstream 507962 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 926236 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1731126 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1781066 75752937 ~ 75765291 (+)
LOC110526613 LOC106587615 coding downstream 175438 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 265993 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 300575 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 414862 77963249 ~ 77963303 (+)
LOC110526617 LOC106562414 coding downstream 419780 77968167 ~ 78042147 (+)
G547980 NA non-coding upstream 66541 77479605 ~ 77479816 (+)
G547963 NA non-coding upstream 109326 77436159 ~ 77437031 (+)
G547962 NA non-coding upstream 112269 77433866 ~ 77434088 (+)
G547896 NA non-coding upstream 235314 77310404 ~ 77311043 (+)
G547892 NA non-coding upstream 238093 77306684 ~ 77308264 (+)
G548033 NA non-coding downstream 19926 77568313 ~ 77568950 (+)
G548315 NA non-coding downstream 101194 77649581 ~ 77649791 (+)
G548317 NA non-coding downstream 102608 77650995 ~ 77651198 (+)
G548347 NA non-coding downstream 134226 77682613 ~ 77682835 (+)
G548441 NA non-coding downstream 224063 77772450 ~ 77778738 (+)
G548000 NA other upstream 22934 77512609 ~ 77523423 (+)
G547884 NA other upstream 267003 77277992 ~ 77279354 (+)
G546464 LOC106562315 other upstream 1575683 75928228 ~ 75970674 (+)
G545601 NA other upstream 2123605 75421861 ~ 75422752 (+)
G548703 NA other downstream 872473 78420860 ~ 78496470 (+)
G549342 NA other downstream 1220869 78769256 ~ 78769907 (+)
G549345 NA other downstream 1223725 78772112 ~ 78772557 (+)

Expression


Co-expression Network