G548033


Basic Information

Item Value
gene id G548033
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77568313 ~ 77568950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU620493
AAATAGACCCTGGTGTACAGACCCAATAGACCCATGTACAGGTAAAGTTTGGAAAACATACCATGTATACTTGATATCCAGGTATACCATGTAGACTTGATATCCAGGTATACCATGTAGACTTGATATCCAGgtataccatgtagacttgatattcaggtataccaTGTAGACTTGAAATTCAGGTATACCATGTAGACttgatattcagGTATACCATGTAGACTTGATATCCAGGTATACCATGTAGACttgatattcaggtataccaTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU620493 True 274 lncRNA 0.37 3 77568313 77568950

Neighbor

gene id symbol gene type direction distance location
irx5a irx5 coding upstream 68880 77495753 ~ 77499433 (+)
LOC110526968 fto coding upstream 529918 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 948192 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1753082 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1803022 75752937 ~ 75765291 (+)
LOC110526613 LOC106587615 coding downstream 154875 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 245430 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 280012 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 394299 77963249 ~ 77963303 (+)
LOC110526617 LOC106562414 coding downstream 399217 77968167 ~ 78042147 (+)
G548024 NA non-coding upstream 19926 77546357 ~ 77548387 (+)
G547980 NA non-coding upstream 88497 77479605 ~ 77479816 (+)
G547963 NA non-coding upstream 131282 77436159 ~ 77437031 (+)
G547962 NA non-coding upstream 134225 77433866 ~ 77434088 (+)
G547896 NA non-coding upstream 257270 77310404 ~ 77311043 (+)
G548315 NA non-coding downstream 80631 77649581 ~ 77649791 (+)
G548317 NA non-coding downstream 82045 77650995 ~ 77651198 (+)
G548347 NA non-coding downstream 113663 77682613 ~ 77682835 (+)
G548441 NA non-coding downstream 203500 77772450 ~ 77778738 (+)
G548442 NA non-coding downstream 206707 77775657 ~ 77778151 (+)
G548000 NA other upstream 44890 77512609 ~ 77523423 (+)
G547884 NA other upstream 288959 77277992 ~ 77279354 (+)
G546464 LOC106562315 other upstream 1597639 75928228 ~ 75970674 (+)
G545601 NA other upstream 2145561 75421861 ~ 75422752 (+)
G548703 NA other downstream 851910 78420860 ~ 78496470 (+)
G549342 NA other downstream 1200306 78769256 ~ 78769907 (+)
G549345 NA other downstream 1203162 78772112 ~ 78772557 (+)

Expression


Co-expression Network