G548442


Basic Information

Item Value
gene id G548442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77775657 ~ 77778151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU620957
ctataacaatatgacatatagcttactgtagactctataacaatatgaaatataggttactgtagactctataacaatatgacacataggttactgtagactgtAGAACAATTTACAGGTTACTGTAGATTACTGTAGAttctagaacaatatgacatagaGGTTACTGGAAACTCTAGAATAATATGACATATAggtaggttactgtagactagaacaatatgaaatataggttactgtagacactagaacaatatgacttataggttactgtagactctataacaatatgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU620957 True 295 lncRNA 0.30 2 77775657 77778151

Neighbor

gene id symbol gene type direction distance location
LOC110526613 LOC106587615 coding upstream 45168 77723825 ~ 77730489 (+)
irx5a irx5 coding upstream 276224 77495753 ~ 77499433 (+)
LOC110526968 fto coding upstream 737262 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 1155536 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1960426 75779416 ~ 75815231 (+)
LOC110526614 mmp2 coding downstream 36229 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 70811 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 185098 77963249 ~ 77963303 (+)
LOC110526617 LOC106562414 coding downstream 190016 77968167 ~ 78042147 (+)
LOC110525051 LOC106587608 coding downstream 309065 78087216 ~ 78088746 (+)
G548347 NA non-coding upstream 92822 77682613 ~ 77682835 (+)
G548317 NA non-coding upstream 124459 77650995 ~ 77651198 (+)
G548315 NA non-coding upstream 125866 77649581 ~ 77649791 (+)
G548033 NA non-coding upstream 206707 77568313 ~ 77568950 (+)
G548024 NA non-coding upstream 227270 77546357 ~ 77548387 (+)
G548457 NA non-coding downstream 34182 77812333 ~ 77812538 (+)
G548464 NA non-coding downstream 39464 77817615 ~ 77817837 (+)
G548466 NA non-coding downstream 49075 77827226 ~ 77827884 (+)
G548467 NA non-coding downstream 52746 77830897 ~ 77831676 (+)
G548000 NA other upstream 252234 77512609 ~ 77523423 (+)
G547884 NA other upstream 496303 77277992 ~ 77279354 (+)
G546464 LOC106562315 other upstream 1804983 75928228 ~ 75970674 (+)
G545601 NA other upstream 2352905 75421861 ~ 75422752 (+)
G548703 NA other downstream 642709 78420860 ~ 78496470 (+)
G549342 NA other downstream 991105 78769256 ~ 78769907 (+)
G549345 NA other downstream 993961 78772112 ~ 78772557 (+)

Expression


Co-expression Network