G548457



Basic Information


Item Value
gene id G548457
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77812333 ~ 77812538 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU620972
ATCTGGTGGTTTCCTTGGTCTActacaatttaaataaatacaaaatgtaagTAAAGTCCTAATGAAAGGAAAAGATCAAAGCAGAAGCTGCTCGATGTCTGTTGTTTAGCCATTCGACACATTTAACAAACCACCATTATGTTGTATAGGCTGCTATACTCTACCAACCCTGTCATACTGAGCAGCCTATGAACATAGACCTATTA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU620972 True 206 lncRNA 0.37 1 77812333 77812538

Neighbor


gene id symbol gene type direction distance location
LOC110526613 LOC106587615 coding upstream 81844 77723825 ~ 77730489 (+)
irx5a irx5 coding upstream 312900 77495753 ~ 77499433 (+)
LOC110526968 fto coding upstream 773938 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 1192212 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1997102 75779416 ~ 75815231 (+)
LOC110526614 mmp2 coding downstream 1842 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 36424 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 150711 77963249 ~ 77963303 (+)
LOC110526617 LOC106562414 coding downstream 155629 77968167 ~ 78042147 (+)
LOC110525051 LOC106587608 coding downstream 274678 78087216 ~ 78088746 (+)
G548441 NA non-coding upstream 33595 77772450 ~ 77778738 (+)
G548442 NA non-coding upstream 34182 77775657 ~ 77778151 (+)
G548347 NA non-coding upstream 129498 77682613 ~ 77682835 (+)
G548317 NA non-coding upstream 161135 77650995 ~ 77651198 (+)
G548315 NA non-coding upstream 162542 77649581 ~ 77649791 (+)
G548464 NA non-coding downstream 5077 77817615 ~ 77817837 (+)
G548466 NA non-coding downstream 14688 77827226 ~ 77827884 (+)
G548467 NA non-coding downstream 18359 77830897 ~ 77831676 (+)
G548472 NA non-coding downstream 44263 77856801 ~ 77857727 (+)
G548000 NA other upstream 288910 77512609 ~ 77523423 (+)
G547884 NA other upstream 532979 77277992 ~ 77279354 (+)
G546464 LOC106562315 other upstream 1841659 75928228 ~ 75970674 (+)
G545601 NA other upstream 2389581 75421861 ~ 75422752 (+)
G548703 NA other downstream 608322 78420860 ~ 78496470 (+)
G549342 NA other downstream 956718 78769256 ~ 78769907 (+)
G549345 NA other downstream 959574 78772112 ~ 78772557 (+)

Expression



Co-expression Network